Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00579 | ATGGCATCGTCGTCCAACTCCCCCTGTGCAGCCTGCAAATTTCTCCGCCGGAAATGTCAGCTTGAGTGCGTTTTCGCTCCCTACTTCCCGCCCGACCAACCTCAAAAATTCGCAAACGTACACAAAGTGTTCGGAGCAAGCAATGTCACGAAGCTTCTCAATGAGCTCCACCCGCATCAGCGAGAAGATGCCGTCAATTCCCTCGCCTACGAGGCCGACATGCGCCTCCGAGATCCGGTCTATGGGTGTGTAGGGGTCATCTCCCTCCTCCAGCACCAACTCCGGCAGCTCCAAATCGACCTCAGCTGCGCAAAATCCGAGCTCTCGAAATACCAAAATCTTGGCCTGACCGGGCATGGCCTCATTGCCGCCGCTGCAGCAGCTGCCACTTCCACTCACAACCACCACCACCTGCAGAACCTCGGAATCAACCTTATTGGCTCCGGCAAAGATTATCACCACCACCACCAACTGTTCCCTCGCGATCAGGCCCAGCCGATCGGGAGGGGATATGACGTTGCCGGAAACAGCGTTTACGATGGCGGTCTCCTTGCGATGAATGTTTCTAGTTTGGGCCAACTCAGTCAGTTTCAGCAACCGAGGGCTGGAGGTGACGATCACCGCCGAACGATCGATCCCTCTTAG | 645 | 56.28 | MASSSNSPCAACKFLRRKCQLECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQNLGLTGHGLIAAAAAAATSTHNHHHLQNLGINLIGSGKDYHHHHQLFPRDQAQPIGRGYDVAGNSVYDGGLLAMNVSSLGQLSQFQQPRAGGDDHRRTIDPS | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 12612407 | 12613051 | - | Bma015117.1 | Bma02g00579 | 77829 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00579 | 214 | Pfam | Lateral organ boundaries (LOB) domain | 8 | 105 | IPR004883 | - | |
Bma02g00579 | 214 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 3 | 172 | - | - | |
Bma02g00579 | 214 | Coils | Coil | 87 | 114 | - | - | |
Bma02g00579 | 214 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 6-LIKE | 3 | 172 | - | - | |
Bma02g00579 | 214 | ProSiteProfiles | LOB domain profile. | 7 | 108 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g00579 | Bma-Chr2:12612407 | Bma06g00422 | Bma-Chr6:15286261 | 9.16E-59 | dispersed | |
Bma01g01181 | Bma-Chr1:13295367 | Bma02g00579 | Bma-Chr2:12612407 | 1.61E-150 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56887 | PF03195 | LOB | 3.00E-42 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00579 | - | - | vvi:100262280 | 351.288 |