Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00579 ATGGCATCGTCGTCCAACTCCCCCTGTGCAGCCTGCAAATTTCTCCGCCGGAAATGTCAGCTTGAGTGCGTTTTCGCTCCCTACTTCCCGCCCGACCAACCTCAAAAATTCGCAAACGTACACAAAGTGTTCGGAGCAAGCAATGTCACGAAGCTTCTCAATGAGCTCCACCCGCATCAGCGAGAAGATGCCGTCAATTCCCTCGCCTACGAGGCCGACATGCGCCTCCGAGATCCGGTCTATGGGTGTGTAGGGGTCATCTCCCTCCTCCAGCACCAACTCCGGCAGCTCCAAATCGACCTCAGCTGCGCAAAATCCGAGCTCTCGAAATACCAAAATCTTGGCCTGACCGGGCATGGCCTCATTGCCGCCGCTGCAGCAGCTGCCACTTCCACTCACAACCACCACCACCTGCAGAACCTCGGAATCAACCTTATTGGCTCCGGCAAAGATTATCACCACCACCACCAACTGTTCCCTCGCGATCAGGCCCAGCCGATCGGGAGGGGATATGACGTTGCCGGAAACAGCGTTTACGATGGCGGTCTCCTTGCGATGAATGTTTCTAGTTTGGGCCAACTCAGTCAGTTTCAGCAACCGAGGGCTGGAGGTGACGATCACCGCCGAACGATCGATCCCTCTTAG 645 56.28 MASSSNSPCAACKFLRRKCQLECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQNLGLTGHGLIAAAAAAATSTHNHHHLQNLGINLIGSGKDYHHHHQLFPRDQAQPIGRGYDVAGNSVYDGGLLAMNVSSLGQLSQFQQPRAGGDDHRRTIDPS 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12612407 12613051 - Bma015117.1 Bma02g00579 77829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00579 214 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Bma02g00579 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 172 - -
Bma02g00579 214 Coils Coil 87 114 - -
Bma02g00579 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 172 - -
Bma02g00579 214 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00579 Bma-Chr2:12612407 Bma06g00422 Bma-Chr6:15286261 9.16E-59 dispersed
Bma01g01181 Bma-Chr1:13295367 Bma02g00579 Bma-Chr2:12612407 1.61E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56887 PF03195 LOB 3.00E-42 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00579 - - vvi:100262280 351.288