Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00592 ATGGATTCGGAGGAGGATGAGTTCGATATGCATGACGCTCACGATGTTGATGACGAAGATTTCTATAGCGGCGGCGAAGACGATGCAGCTGCAGTGGACAGTGACGATGCTGATTTCGCCGATTACGAGTTCATTGATAACGATTCAGATGATTCTGACGGTGTTATCTCGCATCGGCACCAGCCAAACTTTACCATCTTGAGTGAGGCAGATATACACCAGCGCCAAGAGGATGATATCATGAGAGTATCTACCGTTCTTTCAATTCCAAAGGTTTCAGCTAGCATCCTGCTCCGCTATTATAATTGGAGCGTCAGTAAAGTGCATGATGAATGGTTTGCTGACGAAGAAAAGGTTCGTAGGGCTGTTGGCTTGCTGGCCAAACAAGTTGTTGATTTTTCTAATGCGAAAGTACTAGCTTGTGGCATATGTTTTGAAACCTATCCTTCTGATAGGATATGTACTGCTTCTTGTGGTCATCCATTTTGCAAAGTGTGCTGGACAGGTTATATTAGTACATCTATTAATGGTGGTCCTGGATGTCTGACGCTGCGATGTCCTGAACCATCTTGTGTTGCTGCTGTTGACCAAGATACAATTAATATGTTGGCGTCAGATGAAGATAAACAGAAGTATTCTCGTTACTTTGTAAGATCTTATATTGAAGACAATCGGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGAAGTGGAAGCTATGATGTGACATGCCGCTGCTCTTATAGCTTTTGCTGGAATTGTACAGAAGAAGCTCATCGTCCTGTTGATTGTGGCACAGTGGCTAAATGGATTTTGAAGAACAGTGCTGAATCAGAAAACATGAATTGGATTTTGGCTAATTCAAAACCTTGTCCAAAATGCAAGAGACCTATTGAAAAAAATCAAGGGTGTATGCATATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGTGCATGGTCTGATCACGGTGAGCGAACTGGTGGATTTTATGCATGTAACCGTTACGAAACGGCGAAGCAGGAGGGTGTGTATGATGAAGCTGAAAAGAGAAGGGAAATGGCGAAGAACTCTCTTGAGAGGTACACTCATTACTATGAAAGATGGGCTACAAACCAATCGTCCAGGCAAAAAGCACTTACAGATCTCCATCAAATGCAAAATGTCCATCTTGAGAAGCTAAGCGACGTACAGTGCCAGCCTGAATCACAGCTCAAGTTCATTACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGAAGAGTACTCAAATGGACTTATGCTTATGGTTTTTATCTGCCTGAGTACGAACATGCAAAGAGACGTTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCGGGGCTTGAACGACTTCATCAGTGTGTGGAAAAGGAACTTCAAGTTTATCTCAATGCAGAAGGCCCATCGAAAGATTTCAATGAGTTTCGCACAAAACTTGCTGGACTAACTAGCGTGACTAGGAACTACTTTGAGAATCTGGTCCGCGCACTTGAAAATGGTCTATCAGACGTGAACTCACACGGTGCTTGCAGCCGTGCAGCCACCTCAAAGATCATGGGAGGCGGCAGTAGCAGGGGTAGAGGCGGGAAGGGCAAAGGGTCAACATCTAGATCGAGCAGTTCAAGCCGAACAGTGGACAATTCCGATCATTAA 1710 44.09 MDSEEDEFDMHDAHDVDDEDFYSGGEDDAAAVDSDDADFADYEFIDNDSDDSDGVISHRHQPNFTILSEADIHQRQEDDIMRVSTVLSIPKVSASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLAKQVVDFSNAKVLACGICFETYPSDRICTASCGHPFCKVCWTGYISTSINGGPGCLTLRCPEPSCVAAVDQDTINMLASDEDKQKYSRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALTDLHQMQNVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSRAATSKIMGGGSSRGRGGKGKGSTSRSSSSSRTVDNSDH 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13457170 13465628 - Bma015137.1 Bma02g00592 77842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00592 569 CDD RING-HC_RBR_TRIAD1_like 141 191 - -
Bma02g00592 569 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 533 - -
Bma02g00592 569 SUPERFAMILY RING/U-box 291 339 - -
Bma02g00592 569 SUPERFAMILY RING/U-box 137 222 - -
Bma02g00592 569 Pfam IBR domain, a half RING-finger domain 210 272 IPR002867 -
Bma02g00592 569 Pfam IBR domain, a half RING-finger domain 289 337 IPR002867 -
Bma02g00592 569 SUPERFAMILY RING/U-box 211 279 - -
Bma02g00592 569 ProSiteProfiles Zinc finger RING-type profile. 141 187 IPR001841 -
Bma02g00592 569 Gene3D - 268 523 - -
Bma02g00592 569 MobiDBLite consensus disorder prediction 548 569 - -
Bma02g00592 569 Coils Coil 358 378 - -
Bma02g00592 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 220 IPR013083 -
Bma02g00592 569 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 533 IPR031127 GO:0004842|GO:0016567
Bma02g00592 569 SMART ibrneu5 210 272 IPR002867 -
Bma02g00592 569 SMART ibrneu5 276 346 IPR002867 -
Bma02g00592 569 ProSiteProfiles TRIAD supradomain profile. 137 350 IPR044066 -
Bma02g00592 569 MobiDBLite consensus disorder prediction 1 32 - -
Bma02g00592 569 MobiDBLite consensus disorder prediction 534 569 - -
Bma02g00592 569 Pfam Ariadne domain 359 520 IPR045840 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00592 Bma-Chr2:13457170 Bma13g01198 Bma-Chr13:45231196 4.16E-12 dispersed
Bma02g00592 Bma-Chr2:13457170 Bma12g00495 Bma-Chr12:14876416 1.08E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00592 K11968 - rcu:8274237 983.4