Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00592 ATGGATTCGGAGGAGGATGAGTTCGATATGCATGACGCTCACGATGTTGATGACGAAGATTTCTATAGCGGCGGCGAAGACGATGCAGCTGCAGTGGACAGTGACGATGCTGATTTCGCCGATTACGAGTTCATTGATAACGATTCAGATGATTCTGACGGTGTTATCTCGCATCGGCACCAGCCAAACTTTACCATCTTGAGTGAGGCAGATATACACCAGCGCCAAGAGGATGATATCATGAGAGTATCTACCGTTCTTTCAATTCCAAAGGTTTCAGCTAGCATCCTGCTCCGCTATTATAATTGGAGCGTCAGTAAAGTGCATGATGAATGGTTTGCTGACGAAGAAAAGGTTCGTAGGGCTGTTGGCTTGCTGGCCAAACAAGTTGTTGATTTTTCTAATGCGAAAGTACTAGCTTGTGGCATATGTTTTGAAACCTATCCTTCTGATAGGATATGTACTGCTTCTTGTGGTCATCCATTTTGCAAAGTGTGCTGGACAGGTTATATTAGTACATCTATTAATGGTGGTCCTGGATGTCTGACGCTGCGATGTCCTGAACCATCTTGTGTTGCTGCTGTTGACCAAGATACAATTAATATGTTGGCGTCAGATGAAGATAAACAGAAGTATTCTCGTTACTTTGTAAGATCTTATATTGAAGACAATCGGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGAAGTGGAAGCTATGATGTGACATGCCGCTGCTCTTATAGCTTTTGCTGGAATTGTACAGAAGAAGCTCATCGTCCTGTTGATTGTGGCACAGTGGCTAAATGGATTTTGAAGAACAGTGCTGAATCAGAAAACATGAATTGGATTTTGGCTAATTCAAAACCTTGTCCAAAATGCAAGAGACCTATTGAAAAAAATCAAGGGTGTATGCATATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGTGCATGGTCTGATCACGGTGAGCGAACTGGTGGATTTTATGCATGTAACCGTTACGAAACGGCGAAGCAGGAGGGTGTGTATGATGAAGCTGAAAAGAGAAGGGAAATGGCGAAGAACTCTCTTGAGAGGTACACTCATTACTATGAAAGATGGGCTACAAACCAATCGTCCAGGCAAAAAGCACTTACAGATCTCCATCAAATGCAAAATGTCCATCTTGAGAAGCTAAGCGACGTACAGTGCCAGCCTGAATCACAGCTCAAGTTCATTACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGAAGAGTACTCAAATGGACTTATGCTTATGGTTTTTATCTGCCTGAGTACGAACATGCAAAGAGACGTTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCGGGGCTTGAACGACTTCATCAGTGTGTGGAAAAGGAACTTCAAGTTTATCTCAATGCAGAAGGCCCATCGAAAGATTTCAATGAGTTTCGCACAAAACTTGCTGGACTAACTAGCGTGACTAGGAACTACTTTGAGAATCTGGTCCGCGCACTTGAAAATGGTCTATCAGACGTGAACTCACACGGTGCTTGCAGCCGTGCAGCCACCTCAAAGATCATGGGAGGCGGCAGTAGCAGGGGTAGAGGCGGGAAGGGCAAAGGGTCAACATCTAGATCGAGCAGTTCAAGCCGAACAGTGGACAATTCCGATCATTAA 1710 44.09 MDSEEDEFDMHDAHDVDDEDFYSGGEDDAAAVDSDDADFADYEFIDNDSDDSDGVISHRHQPNFTILSEADIHQRQEDDIMRVSTVLSIPKVSASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLAKQVVDFSNAKVLACGICFETYPSDRICTASCGHPFCKVCWTGYISTSINGGPGCLTLRCPEPSCVAAVDQDTINMLASDEDKQKYSRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALTDLHQMQNVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSRAATSKIMGGGSSRGRGGKGKGSTSRSSSSSRTVDNSDH 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13457170 13465628 - Bma015137.1 Bma02g00592 77842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00592 569 CDD RING-HC_RBR_TRIAD1_like 141 191 - -
Bma02g00592 569 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 533 - -
Bma02g00592 569 SUPERFAMILY RING/U-box 291 339 - -
Bma02g00592 569 SUPERFAMILY RING/U-box 137 222 - -
Bma02g00592 569 Pfam IBR domain, a half RING-finger domain 210 272 IPR002867 -
Bma02g00592 569 Pfam IBR domain, a half RING-finger domain 289 337 IPR002867 -
Bma02g00592 569 SUPERFAMILY RING/U-box 211 279 - -
Bma02g00592 569 ProSiteProfiles Zinc finger RING-type profile. 141 187 IPR001841 -
Bma02g00592 569 Gene3D - 268 523 - -
Bma02g00592 569 MobiDBLite consensus disorder prediction 548 569 - -
Bma02g00592 569 Coils Coil 358 378 - -
Bma02g00592 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 220 IPR013083 -
Bma02g00592 569 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 533 IPR031127 GO:0004842|GO:0016567
Bma02g00592 569 SMART ibrneu5 210 272 IPR002867 -
Bma02g00592 569 SMART ibrneu5 276 346 IPR002867 -
Bma02g00592 569 ProSiteProfiles TRIAD supradomain profile. 137 350 IPR044066 -
Bma02g00592 569 MobiDBLite consensus disorder prediction 1 32 - -
Bma02g00592 569 MobiDBLite consensus disorder prediction 534 569 - -
Bma02g00592 569 Pfam Ariadne domain 359 520 IPR045840 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00592 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - rcu:8274237 983.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00592 Bma-Chr2:13457170 Bma13g01198 Bma-Chr13:45231196 4.16E-12 dispersed
Bma02g00592 Bma-Chr2:13457170 Bma12g00495 Bma-Chr12:14876416 1.08E-62 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00495 . 164 517 ARIADNE family AT4G34370 75.7 2.8e-164 575.1
Bma12g00495 . 58 517 ARIADNE family AT2G16090 74.7 1.7e-213 738.8
Bma12g00495 . 25 517 ARIADNE family AT3G27710 61.2 2.5e-178 622.1
Bma12g00495 . 44 517 ARIADNE family AT3G27720 51.0 2.0e-134 476.1
Bma02g00592 . 9 536 ARIADNE family AT1G05890 63.9 3.0e-217 751.5
Bma02g00592 . 18 540 ARIADNE family AT1G65430 78.1 2.4e-251 864.8
Bma02g00592 . 11 455 ARIADNE family AT2G31780 53.1 9.7e-144 506.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00592 Bma_Chr02 FPKM 2.933137 1.427585 1.797309 1.243838 1.894421 1.881955 2.3076 0.0 0.0 0.0