Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00609 ATGAGTTGCTTCCCTTGTTTCTCTTCTCAAAGAAGTAAGAAAATCAAGAGCAAGAGAGATCATTCTTTTTCCAATTCCAATGATCATTCCTTATCGAGATCACCCGAAACGAAGAAGAAGAAAGGTGGAGATGAAGCAAAAAAGGAGAAGAATCAAGCCGAAAATGGGAACATTGCAGCAGAAAACTTCACGTTCAGAGACTTAGCAACTGCAACAAATAACTTCAAACAGGAATGTCTTCTGGGTGAAGGTGGATTTGGAAGAGTTTATAAAGGAACCCTAAAAACTAACAACCAGGTTGTGGCTGTGAAGCAGCTAGACAGAAATGGTCTTCAAGGAAATAAGGAATTTCTTGTTGAGGTTCTCATGTTAAGCCTCTTGCACCATCCCAATTTGGTCAACCTCGTCGGATACTGCGCCGATGGAGACCAACGGCTGCTCGTTTATGAGTTCATGTCTGGCGGATCCGTCGAAGACCATCTTCTTGATGTAGAAGAAGGGCAAGAGGTATTGGATTGGTACACAAGAATAAAGATAGCATCTGGTGCAGCTAAAGGACTGGAATATTTACATGACAAGGCAAACCCACCAGTAATATACAGGGATCTCAAGTCCTCTAACATCTTATTGGACCATGAATATAACCCTAAGTTGTCGGATTTCGGTCTGGCGAAGCTTGGCCACGTCGGGGACAAGATGCACGTGTCCTCGAGAGTTATGGGAACTTATGGCTATTGTGCCCCGGAATATGCCAAGACTGGACAACTCACTTTGAAGTCCGACGTGTATAGTTTTGGCGTTGTTTTGCTTGAACTCATTACGGGAAGAAGAGCAATCGACACTACTCGGACAACTAATCAGCAAAATCTTGTTGCTTGGGCACTACCACTGTTTAGAGACCCTACAAAGTACCCAGGAATGGCGGATCCACTACTCAAAGGGAATTTCCCAGAAAAAGACCTGAATCAAGCCGTCGCCATAGCCGCCATGTGCCTCCAGGAAGAAGCCTCAGTCCGTCCATTAATAAGCGACGTCGTCACCACCCTCAGCTTTCTCTCCTCCGTTCCTCCGCCTACTCCTCCGCCATCATCTCCCTCTCTCGATCATCTCCCTCGTGAAGAAGACGAAAATTCGGATTTATCAAACGCCGAAGAAGGAGAAGAAGAAAAGGATGAGGAAACAGAAAAGGATGAAGAAGCTTCTAAGAACGAGGTAGAAATACGAGAAAATGGTTGGAGCCCGACAAGCTCCGGCATGAGCAGTCGCAAGTCGGAGAACGGGAGCTTCTCTTCAACCCACGTAAGGAGCAGCAAAATACCGGAGAAGGCGGTTGCTTGGAGCAGGAACAGCAGTTTGAGCAGCAAAAAGTCAGTCGCTAATGAGGAATCAGTGCTGAGCCATAAAACAAGCAAAGCTGAATCTGGTCGCCATGGCCATGGAAGCAGCTGGGGATCGGAGGAAGAGAGCGCGTACTCGTTCAGCCCAAACAGCGAGAGCTTTCAGAAATCTTTTCACAAGAAGGAAGGATCACAAAGTGGGAAAATTTTCTCACAGGATAATGACAAGGCCAGAGGATCGGAGAATCAAACTGTGTCTATTTAG 1602 46.19 MSCFPCFSSQRSKKIKSKRDHSFSNSNDHSLSRSPETKKKKGGDEAKKEKNQAENGNIAAENFTFRDLATATNNFKQECLLGEGGFGRVYKGTLKTNNQVVAVKQLDRNGLQGNKEFLVEVLMLSLLHHPNLVNLVGYCADGDQRLLVYEFMSGGSVEDHLLDVEEGQEVLDWYTRIKIASGAAKGLEYLHDKANPPVIYRDLKSSNILLDHEYNPKLSDFGLAKLGHVGDKMHVSSRVMGTYGYCAPEYAKTGQLTLKSDVYSFGVVLLELITGRRAIDTTRTTNQQNLVAWALPLFRDPTKYPGMADPLLKGNFPEKDLNQAVAIAAMCLQEEASVRPLISDVVTTLSFLSSVPPPTPPPSSPSLDHLPREEDENSDLSNAEEGEEEKDEETEKDEEASKNEVEIRENGWSPTSSGMSSRKSENGSFSSTHVRSSKIPEKAVAWSRNSSLSSKKSVANEESVLSHKTSKAESGRHGHGSSWGSEEESAYSFSPNSESFQKSFHKKEGSQSGKIFSQDNDKARGSENQTVSI 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14042659 14045108 - Bma015158.1 Bma02g00609 77859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00609 533 Gene3D Transferase(Phosphotransferase) domain 1 152 355 - -
Bma02g00609 533 Coils Coil 383 403 - -
Bma02g00609 533 Pfam Protein kinase domain 76 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00609 533 PANTHER RECEPTOR-LIKE KINASE LIP1 1 430 - -
Bma02g00609 533 CDD STKc_IRAK 81 349 - -
Bma02g00609 533 SUPERFAMILY Protein kinase-like (PK-like) 62 371 IPR011009 -
Bma02g00609 533 MobiDBLite consensus disorder prediction 485 500 - -
Bma02g00609 533 MobiDBLite consensus disorder prediction 510 533 - -
Bma02g00609 533 MobiDBLite consensus disorder prediction 19 54 - -
Bma02g00609 533 MobiDBLite consensus disorder prediction 353 533 - -
Bma02g00609 533 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00609 533 MobiDBLite consensus disorder prediction 378 395 - -
Bma02g00609 533 MobiDBLite consensus disorder prediction 408 465 - -
Bma02g00609 533 MobiDBLite consensus disorder prediction 1 56 - -
Bma02g00609 533 PANTHER OS07G0668900 PROTEIN 1 430 - -
Bma02g00609 533 MobiDBLite consensus disorder prediction 466 483 - -
Bma02g00609 533 SMART serkin_6 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00609 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Bma02g00609 533 Gene3D Phosphorylase Kinase; domain 1 36 151 - -
Bma02g00609 533 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00609 Bma-Chr2:14042659 Bma02g00880 Bma-Chr2:47096760 1.43E-177 dispersed
Bma13g01040 Bma-Chr13:43076731 Bma02g00609 Bma-Chr2:14042659 4.38E-55 dispersed
Bma15g00679 Bma-Chr15:11162224 Bma02g00609 Bma-Chr2:14042659 4.08E-177 transposed
Bma04g00288 Bma-Chr4:2323193 Bma02g00609 Bma-Chr2:14042659 1.04E-146 transposed
Bma01g01204 Bma-Chr1:13833637 Bma02g00609 Bma-Chr2:14042659 0 wgd
Bma02g00609 Bma-Chr2:14042659 Bma08g00556 Bma-Chr8:33652638 1.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66350 PF00069 Pkinase 1.50E-47 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00609 - - atr:18447220 523.857