Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00645 ATGAATAAAACTCATCGTTTACCTTTTCAGAATTCTAGTTCATATGCTAATTTCCCTTTTGATATTGTACATACGGATGTTTGGGGTCCATTTCCTATAAAATCTATTACTGGTGTACGCTATTTTGTATTATTTGTCAATGACTGCACTCGATTGATTTGGCTATTTCCTTTGAAATTAAAAAGTGAAGTTCACACTATTTTTGTGCACTTTCATAAAGTTATTTATACTCAATTTGGTGTTAATATCAAAATCGTCCAATTGGACTGGGGTGGAGAGTTCCAATCTCTCTCCTATTTGTTTAAGTCTCTTGGTATTCATTATCGTGTTTCATGTCCCTATACCCAAAATCAAAATGGTCGGGTAGAACATAAAAATCATCATGTTGTCGAAACTGGTCTTGCACTATTGTTTCATTTCTTAGTTCTTCAACACTTCTGGCCCTATGCTTTTGCCACAACTACTACCTTAATCAATTTATTACCTACTCCTATCCTACAACACAAATCTCTGTTTGAATGTTTGTTCGGTTCTATTCCAGATTATTCATCAGTGCTTGCTTTTGGCTGTCTGCGCTTTCCTTTTCTTCGACCCTTCAATAAACATAAACTACAACCTCATTCTATTCCTTGTGTCTTCTTAGGACCTAGCCCTCAACACAAAGGCTATATATGCTTAGATTTCAATATCCCTAATCTCCGCGTTGGAACTCTGGATTCGCTCCTTTCACTAAGCGACGATCTCTTAAAGTCGAATAGCTTTGTGGAAGGGGTGTCTCACAAGATAAGGCGGCAGATTGATGAATTGGAAAGAGCATCGAGCTTGGAGAGCACCGGTATGACGGTAGACGGCGTACCAGTAGAATCATATCTCACTAGGTTCATCTGGGATGAAGCCAAGTACCCGACAATGTCACCTTTGCGGGAAACTGTGGATAGCATTCATGGTTTGGTAGCAAAGATTGAGGATGATCTTAAGGTTCGTGTTTCTGAGTACAGTAATGTGCGGAGTCAGTTGAATGCTATCAATAGAAAGCAAAGTGGAAGCTTAGCTGTCCGTGATCTTTCCAATCTTGTGAAACCAGAGGATATAATAACATCAGAGCATCTTGTAACATTACTTGCAATTGTTCCCAAGTATTCGCAAAAGGAATGGCTGTCTAGCTATGAAACGTTGACAAGCTATGTGGTCCCAAGGTCTTCAAAGAAGTTATATGAAGATAATGAGTATGCTCTTTATACTGTGACACTATTTGGTCGTGCGGCGGATAATTTTAGAACAAGCGCAAGGGATAGAAACTTTCAGATTCGTGATTTTGAACATAGTCCAGAAGCACAAGATAGCAGGAAGCAGGAGTTACAAAAGTTGATGCAGGACCAGGAAAGTATGAGAAGCTCTCTTTTGCAGTGGTGTTATGCCAGTTATGGCGAGGTTTTCAGCTCATGGATGCACTTTTGTGCAGTTCGTGTTTTTGCCGAGAGCATTCTTAGATATGGATTGCCACCATCTTTCTTGGCTTGTGTTTTGTCTCCATCTGTGAAAAGTGAGAAGAGGGTGAGATCAATTCTCGAAGGGTTCACATATTGGAAAACCGAAGATGATATCGGAGGGGGAATGGTTGGTCTGGCAGGGGATGCCGATGCCTATCCGTACGTCTCCTTTACGATAAATCTTGTCTAA 1680 40.18 MNKTHRLPFQNSSSYANFPFDIVHTDVWGPFPIKSITGVRYFVLFVNDCTRLIWLFPLKLKSEVHTIFVHFHKVIYTQFGVNIKIVQLDWGGEFQSLSYLFKSLGIHYRVSCPYTQNQNGRVEHKNHHVVETGLALLFHFLVLQHFWPYAFATTTTLINLLPTPILQHKSLFECLFGSIPDYSSVLAFGCLRFPFLRPFNKHKLQPHSIPCVFLGPSPQHKGYICLDFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSHKIRRQIDELERASSLESTGMTVDGVPVESYLTRFIWDEAKYPTMSPLRETVDSIHGLVAKIEDDLKVRVSEYSNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFGRAADNFRTSARDRNFQIRDFEHSPEAQDSRKQELQKLMQDQESMRSSLLQWCYASYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLSPSVKSEKRVRSILEGFTYWKTEDDIGGGMVGLAGDADAYPYVSFTINLV 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17106826 17118609 - Bma015226.2 Bma02g00645 77895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00645 559 Gene3D - 230 501 - -
Bma02g00645 559 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 227 558 - -
Bma02g00645 559 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 227 558 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bma02g00645 559 Gene3D - 352 440 - -
Bma02g00645 559 SUPERFAMILY Vacuolar ATP synthase subunit C 224 558 IPR036132 GO:0015078|GO:0033180|GO:1902600
Bma02g00645 559 SUPERFAMILY Ribonuclease H-like 18 185 IPR012337 -
Bma02g00645 559 Gene3D Vacuolar atp synthase subunit c; domain 1 225 527 - -
Bma02g00645 559 Gene3D - 12 187 IPR036397 GO:0003676
Bma02g00645 559 Pfam V-ATPase subunit C 225 526 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bma02g00645 559 CDD V-ATPase_C 228 556 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bma02g00645 559 ProSiteProfiles Integrase catalytic domain profile. 15 179 IPR001584 GO:0015074
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00645 Bma-Chr2:17106826 Bma08g00343 Bma-Chr8:6198827 2.21E-48 dispersed
Bma02g00645 Bma-Chr2:17106826 Bma06g00212 Bma-Chr6:2539717 3.19E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00645 K02148 - qsu:112025646 577.785