Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00645 | ATGAATAAAACTCATCGTTTACCTTTTCAGAATTCTAGTTCATATGCTAATTTCCCTTTTGATATTGTACATACGGATGTTTGGGGTCCATTTCCTATAAAATCTATTACTGGTGTACGCTATTTTGTATTATTTGTCAATGACTGCACTCGATTGATTTGGCTATTTCCTTTGAAATTAAAAAGTGAAGTTCACACTATTTTTGTGCACTTTCATAAAGTTATTTATACTCAATTTGGTGTTAATATCAAAATCGTCCAATTGGACTGGGGTGGAGAGTTCCAATCTCTCTCCTATTTGTTTAAGTCTCTTGGTATTCATTATCGTGTTTCATGTCCCTATACCCAAAATCAAAATGGTCGGGTAGAACATAAAAATCATCATGTTGTCGAAACTGGTCTTGCACTATTGTTTCATTTCTTAGTTCTTCAACACTTCTGGCCCTATGCTTTTGCCACAACTACTACCTTAATCAATTTATTACCTACTCCTATCCTACAACACAAATCTCTGTTTGAATGTTTGTTCGGTTCTATTCCAGATTATTCATCAGTGCTTGCTTTTGGCTGTCTGCGCTTTCCTTTTCTTCGACCCTTCAATAAACATAAACTACAACCTCATTCTATTCCTTGTGTCTTCTTAGGACCTAGCCCTCAACACAAAGGCTATATATGCTTAGATTTCAATATCCCTAATCTCCGCGTTGGAACTCTGGATTCGCTCCTTTCACTAAGCGACGATCTCTTAAAGTCGAATAGCTTTGTGGAAGGGGTGTCTCACAAGATAAGGCGGCAGATTGATGAATTGGAAAGAGCATCGAGCTTGGAGAGCACCGGTATGACGGTAGACGGCGTACCAGTAGAATCATATCTCACTAGGTTCATCTGGGATGAAGCCAAGTACCCGACAATGTCACCTTTGCGGGAAACTGTGGATAGCATTCATGGTTTGGTAGCAAAGATTGAGGATGATCTTAAGGTTCGTGTTTCTGAGTACAGTAATGTGCGGAGTCAGTTGAATGCTATCAATAGAAAGCAAAGTGGAAGCTTAGCTGTCCGTGATCTTTCCAATCTTGTGAAACCAGAGGATATAATAACATCAGAGCATCTTGTAACATTACTTGCAATTGTTCCCAAGTATTCGCAAAAGGAATGGCTGTCTAGCTATGAAACGTTGACAAGCTATGTGGTCCCAAGGTCTTCAAAGAAGTTATATGAAGATAATGAGTATGCTCTTTATACTGTGACACTATTTGGTCGTGCGGCGGATAATTTTAGAACAAGCGCAAGGGATAGAAACTTTCAGATTCGTGATTTTGAACATAGTCCAGAAGCACAAGATAGCAGGAAGCAGGAGTTACAAAAGTTGATGCAGGACCAGGAAAGTATGAGAAGCTCTCTTTTGCAGTGGTGTTATGCCAGTTATGGCGAGGTTTTCAGCTCATGGATGCACTTTTGTGCAGTTCGTGTTTTTGCCGAGAGCATTCTTAGATATGGATTGCCACCATCTTTCTTGGCTTGTGTTTTGTCTCCATCTGTGAAAAGTGAGAAGAGGGTGAGATCAATTCTCGAAGGGTTCACATATTGGAAAACCGAAGATGATATCGGAGGGGGAATGGTTGGTCTGGCAGGGGATGCCGATGCCTATCCGTACGTCTCCTTTACGATAAATCTTGTCTAA | 1680 | 40.18 | MNKTHRLPFQNSSSYANFPFDIVHTDVWGPFPIKSITGVRYFVLFVNDCTRLIWLFPLKLKSEVHTIFVHFHKVIYTQFGVNIKIVQLDWGGEFQSLSYLFKSLGIHYRVSCPYTQNQNGRVEHKNHHVVETGLALLFHFLVLQHFWPYAFATTTTLINLLPTPILQHKSLFECLFGSIPDYSSVLAFGCLRFPFLRPFNKHKLQPHSIPCVFLGPSPQHKGYICLDFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSHKIRRQIDELERASSLESTGMTVDGVPVESYLTRFIWDEAKYPTMSPLRETVDSIHGLVAKIEDDLKVRVSEYSNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFGRAADNFRTSARDRNFQIRDFEHSPEAQDSRKQELQKLMQDQESMRSSLLQWCYASYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLSPSVKSEKRVRSILEGFTYWKTEDDIGGGMVGLAGDADAYPYVSFTINLV | 559 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 17106826 | 17118609 | - | Bma015226.2 | Bma02g00645 | 77895 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00645 | 559 | Gene3D | - | 230 | 501 | - | - | |
Bma02g00645 | 559 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 227 | 558 | - | - | |
Bma02g00645 | 559 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 227 | 558 | IPR004907 | GO:0033180|GO:0046961|GO:1902600 | |
Bma02g00645 | 559 | Gene3D | - | 352 | 440 | - | - | |
Bma02g00645 | 559 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 224 | 558 | IPR036132 | GO:0015078|GO:0033180|GO:1902600 | |
Bma02g00645 | 559 | SUPERFAMILY | Ribonuclease H-like | 18 | 185 | IPR012337 | - | |
Bma02g00645 | 559 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 225 | 527 | - | - | |
Bma02g00645 | 559 | Gene3D | - | 12 | 187 | IPR036397 | GO:0003676 | |
Bma02g00645 | 559 | Pfam | V-ATPase subunit C | 225 | 526 | IPR004907 | GO:0033180|GO:0046961|GO:1902600 | |
Bma02g00645 | 559 | CDD | V-ATPase_C | 228 | 556 | IPR004907 | GO:0033180|GO:0046961|GO:1902600 | |
Bma02g00645 | 559 | ProSiteProfiles | Integrase catalytic domain profile. | 15 | 179 | IPR001584 | GO:0015074 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g00645 | Bma-Chr2:17106826 | Bma08g00343 | Bma-Chr8:6198827 | 2.21E-48 | dispersed | |
Bma02g00645 | Bma-Chr2:17106826 | Bma06g00212 | Bma-Chr6:2539717 | 3.19E-83 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00645 | K02148 | - | qsu:112025646 | 577.785 |