Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00715 ATGGTCAACCGGTGCCGTCACACGGTCTGGCCTGGTTTGTTATCTGGTGCTGGAACTGCTCAGCTTCCGACCACCGGATTCGCCCTTGGAAGCGACAAGTCAAGGACCATCACGATTCCGAAATCATGGTCGGGACGGCTATGGGGTCGGACGATCTGTTCCCAGGATTCCAGCGGAAAGTTCTCCTGCGTCACCGGCGACTGTGGCTCCGGAAAGCTAGAGTGCGCCGGTGGCGGCGCGAAGCCGCCTGCAACGCTGGCTGAGTTCACTTTAAACGGCGCCGACGGCTTGGATTTCTACGACGTCAGCTTGGTTGACGGGTACAACCTTCCTATACTTGTAGTGGCAAAGGGAGGTACAAGAGGCGGATGCGGGGCCACTGGTTGTTTGGTAGACCTAAACAGCGCGTGCCCGACGGCGCTAAGAGTAGCCAGTGAGAGTAGCCGCCGGAGTGTGGCTTGTAGAAGCGCGTGTGAGGCTTTCGGCGACCCCCAGTTTTGCTGCAGCGAGGCGTATGCTACACCTGACACGTGTTCACCCTCAATGTATTCACTCTTCTTCAAACACGCATGCCCACGCGCGTACAGCTATGCGTATGATGACACGACAAGTACCTTCACTTGTGCCTCCGCCGACTACCTGATTATTTTCTGTCCGCTTCCTTATACCAGGTGA 675 56.89 MVNRCRHTVWPGLLSGAGTAQLPTTGFALGSDKSRTITIPKSWSGRLWGRTICSQDSSGKFSCVTGDCGSGKLECAGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPILVVAKGGTRGGCGATGCLVDLNSACPTALRVASESSRRSVACRSACEAFGDPQFCCSEAYATPDTCSPSMYSLFFKHACPRAYSYAYDDTTSTFTCASADYLIIFCPLPYTR 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30599211 30599885 + Bma015379.1 Bma02g00715 77965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00715 224 PANTHER OS03G0233200 PROTEIN 1 222 IPR001938 -
Bma02g00715 224 PRINTS Pathogenesis-related protein signature 209 218 IPR001938 -
Bma02g00715 224 PRINTS Pathogenesis-related protein signature 46 57 IPR001938 -
Bma02g00715 224 PRINTS Pathogenesis-related protein signature 98 114 IPR001938 -
Bma02g00715 224 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 1 222 - -
Bma02g00715 224 Gene3D Thaumatin 1 219 IPR037176 -
Bma02g00715 224 ProSitePatterns Thaumatin family signature. 59 75 IPR017949 -
Bma02g00715 224 Pfam Thaumatin family 3 219 IPR001938 -
Bma02g00715 224 PIRSF PR5 1 223 IPR001938 -
Bma02g00715 224 ProSiteProfiles Thaumatin family profile. 1 219 IPR001938 -
Bma02g00715 224 CDD TLP-PA 1 218 - -
Bma02g00715 224 SUPERFAMILY Osmotin, thaumatin-like protein 1 219 IPR037176 -
Bma02g00715 224 SMART tha2 1 219 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00724 Bma-Chr1:6630585 Bma02g00715 Bma-Chr2:30599211 2.29E-46 dispersed
Bma02g00715 Bma-Chr2:30599211 Bma09g00169 Bma-Chr9:6244082 6.86E-103 dispersed
Bma02g00715 Bma-Chr2:30599211 Bma01g02374 Bma-Chr1:81385966 1.38E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00715 - - peu:105141079 391.349