Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00735 ATGAAGAATACCATCTCTGGACGTCAAGAGAAGACAGTTATGAAGCTTGTTGTAGATGCTGAGACTGATAAAGTCCTTGGAACATCCATGTGTGGACCAGATGCTCCTGAAATTATACAGGGCATTGCTGTCGCACTCAAGTGTGGAGCAACCAAGTCACAATTTGACAGCACTGTTGGAATACACCCTTCTGCTGCAGAGGAATTTGTGACCATGCGGTCACTGACCAGGCGGGTGGCTGGAAATAAACCAAAAACAAATCTTTAG 267 45.32 MKNTISGRQEKTVMKLVVDAETDKVLGTSMCGPDAPEIIQGIAVALKCGATKSQFDSTVGIHPSAAEEFVTMRSLTRRVAGNKPKTNL 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37732870 37734366 + Bma015435.1 Bma02g00735 77985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00735 88 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 1 83 - -
Bma02g00735 88 Gene3D - 1 87 IPR016156 GO:0016491|GO:0050660
Bma02g00735 88 PRINTS Pyridine nucleotide disulphide reductase class-I signature 25 40 - -
Bma02g00735 88 PRINTS Pyridine nucleotide disulphide reductase class-I signature 47 67 - -
Bma02g00735 88 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 6 75 IPR016156 GO:0016491|GO:0050660
Bma02g00735 88 PANTHER GLUTATHIONE REDUCTASE, CYTOSOLIC 1 83 - -
Bma02g00735 88 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 3 72 IPR004099 GO:0045454
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00735 K00383 GSR, gor; glutathione reductase (NADPH) [EC:1.8.1.7] - qsu:112040089 164.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00735 Bma-Chr2:37732870 Bma09g00613 Bma-Chr9:43362005 1.07E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g863 . . Bda03g01152 . . Bpe14g01304 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0222 Cone15ag0239 . . . . . . . . . . . . Bma02g00735 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004411 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 2 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00735 Bma_Chr02 FPKM 42.474037 49.326344 22.978254 22.622154 11.331609 10.779765 12.213316 57.678638 61.523201 57.014046