Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00746 ATGTGCAGAAAAACTTCAACTGTTCAGCTGATTAAGAGGCTGGTATATTCCAATTTGTTAGGCGTCGATACTAATTTGAAGAATGGAAGTCTTAAAGAGGGAAATCTTAATTGGGAGATGCTACAATTCAAATCACGGTTTCCTCGAGAAGTTTTACTATGCAGAGTTGGAGATTTTTATGAAGCCATTGGACTGGATGCTTGTATCCTTGTTGAATATGCTGGTTTGAATCCTTTCGGGGGTCAACGGTCAGATAGCATTCCAAGAGCTGGGTGCCCAGTTGTGAATCTTCGACAGACCTTGGATGATCTGACTCGTAATGGGTGGTCAGTGTGCATTGTGGAAGAAGTTCAAGGTCCAACACAGGCTCGTTCTCGCAAAGGTCGTTTTATATCAGGGCATGCACATCCTGGTAGTCCTTATGTCTTTGGACTTGTTGGGGTTAATCACGAACTTGAGTTTCCAGAGCCAATGCCAGTTGTTGGAATCTCTAGATCTGCAAAGGGCTATTGCATTAACTTTGTTCTAGAGACTATGAAGACATATTCATCAGTGGATGGCTTGACTGAAGAGGCATTGGTTACAAAATTACGTACTTTGGCTATTACAGGTACTTGCCGATGGGGAGAATTTGGTGAGGGGGGCCTATTGTGGGGAGAATGCAATGCCAGACATTTCGAATGGTTTGATGGCAATCCCTTGACTGAACTTTTGTTAAAGGTTAAAGAGCTGTATGGGCTTGGGGATGAAGTTCCATTTCGAAATGTTACTATACCTTCAGAAAATAAACCGCGATCTTTAACCTTAGGAACAGCTACACAGATTGGTGCCATACCAACAGAGGGAATACCTTGTTTATTAAAGGTGTTTCTTCCATCAAATTGTGCTGGGCTACCTGCATTGTATATTAGAGATCTGCTTCTCAATCCTCCAGCTTATGATACTGCATTGACGATTCAAGAAACTTGCAAACTTATGAGCAGTGTTACATGTTCAATCCCGGAGTTCACTTGTGTTTCGCCTCCTAAGCTAGTAAAACTATTGGAACTAAAGGAGGCCAATCATATAGAGTTTTGTCGAATGAAAAATGTACTGGATGAAATACTACACATGTATAACAATTCTGAGCTAGAGAAAATCTTGAAACTTCTGATGAATCCTACAGAGATGGCAACTGGCCTAAAAATTGACTTCAACGCCTTTGTTGATGAATGTGAAAGCACAACTAGTAGAATTTCTGAAATGATCTTTCTAGATGGCGAACATGACCAGAAAATCAGTTCTTTTCCTCTTATTCCTGGTGACTTTTATGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAGCGGGCTCATGTAGAGGAAGCCTTTGATGAAGTAGAGAATGCAGCTGAGACTTTATCTCTGGCAGTTCGTGAAGATTTCCTCCCAATAATTTCAAGATTAAAGGCTATTACAGCTCCACTTGGTGGTCCAAAGGGTGAGATATTATATTCTCGAGAGCATGAAGCTGTTTGGTTTAAGGGAAAACGATTTGCACCAGCTGTATGGGCTGGCACCCATGGAGAAGAACAGATTAAGCAACTTAAACCTGCACTGGATTCCAAAGGTAAAAAGGTTGGAGAAGAATGGTTTACCACAGTGAAGGTGGAGGATGCCTTAACAAGGTACCACGAAGCAAGTGCCAAGGCAAAAGTATCGGTTGTATGTTTGTTGAGGCAACTTTCTTCAGAATTGCAAGCTAAAATCAATATCCTTGTGTTTGCTTCCACGTTGCTTGTTATTGCAAAGGCTTTATTTGCTCACGTGAGTGAAGGGATGAGGAGGAGATGGGTTTTTCCTACTCTCGCAGAACCTTCCAGTGCTAAGGGAAACTTATTCAACAAAGATCGTGGAATGAAGTTAGTTGGTCTATCACCATATTGGTTTGATGTTGCAGAAGGCCATGCTGTTTATAATACGGTTGATATGCAATCATTGTTTCTTTTGACTGGACCAAATGGTGGTGGTAAATCTAGCTTGCTTCGATCAATATGTGCTGCTGCATTACTTGGGATGTGTGGATTTATGGTACCTGCAGAGTCAGCTATCATTCCTCATTTTGATTCCATTGTCCTTCATATGAAATCTTATGATAGTCCCGCTGATGGGAAAAGTTCATTTCAGGTAGAAATGTCAGAGATGCGGTCCATTGTTGTTGGAGCCACTGAAAGAAGTCTTGTGCTCATAGATGAAATTTGTCGTGGAACAGAAACAGCTAAAGGAACTTGCATTGCCGGTAGCATTATCGAAAGTCTTGATAAAATTGGTTGCCTTGGTATAGTATCCACTCACTTGCATGGAATTTTTAGTTTGCCTCTAAATACCAGCAGGGTAATTTATAAAGCAATGGGAACAGTGTGTAATAATGGACTTACAAAACCAACTTGGAAGCTGATAGATGGAATCTGTAGAGAAAGCCTCGCATTTGAAACAGCAAAGAAGGAAGGTATTCCCGAGTCAATTATTCATCGGGCGGAAGACTTGTATTCGTCGTTTTATTCTAAAGAAGTGATAGTTGGAAGAGATGAGATTAACTTACTACATCTTTCTTCAAGTGTTAATGGTTCTGATGATCATCAAGTACGTAGTGCAAAAGCAGAAGCCGACAGTCACCCAACAAAATTACCTGTTGAAATCTTGCACAAGGAAGTTGAGCGAGCAATCATTTCTACATGCCATAAGAAGCTTACAGAGCTAACAACGGAGAAAAATACATTAATATTACCAGAAATACGTTGTGTTCTGATTTTCCCTAGGGAAAAACCGCCTCCATCAACAGTAGGTGCTTCAAGCGTTTATGTGATGCTCAGGCCTGATAACAAACTTTATGTTGGACAGTCAGATGATCTTGAAGGTCGTGTACGCGCACATCGCTCAAAAGAGGGAATGGAGAATGCCTCTTTTCTTTATTTTATTGTTCGAGGAAAGAGTTTGGCTTGCCAATTTGAGACACTGCTCATCAACCAGCTTCCTAATCTAGGCTTTCAACTTACCAACACGGCCGATGGAAAGCACAGAAATTTTGGCACATCAAATCTCTCTGTAGAAAGCATGTCTATTTTTTAA 3108 40.89 MCRKTSTVQLIKRLVYSNLLGVDTNLKNGSLKEGNLNWEMLQFKSRFPREVLLCRVGDFYEAIGLDACILVEYAGLNPFGGQRSDSIPRAGCPVVNLRQTLDDLTRNGWSVCIVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVNHELEFPEPMPVVGISRSAKGYCINFVLETMKTYSSVDGLTEEALVTKLRTLAITGTCRWGEFGEGGLLWGECNARHFEWFDGNPLTELLLKVKELYGLGDEVPFRNVTIPSENKPRSLTLGTATQIGAIPTEGIPCLLKVFLPSNCAGLPALYIRDLLLNPPAYDTALTIQETCKLMSSVTCSIPEFTCVSPPKLVKLLELKEANHIEFCRMKNVLDEILHMYNNSELEKILKLLMNPTEMATGLKIDFNAFVDECESTTSRISEMIFLDGEHDQKISSFPLIPGDFYEDMESSWKGRVKRAHVEEAFDEVENAAETLSLAVREDFLPIISRLKAITAPLGGPKGEILYSREHEAVWFKGKRFAPAVWAGTHGEEQIKQLKPALDSKGKKVGEEWFTTVKVEDALTRYHEASAKAKVSVVCLLRQLSSELQAKINILVFASTLLVIAKALFAHVSEGMRRRWVFPTLAEPSSAKGNLFNKDRGMKLVGLSPYWFDVAEGHAVYNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGMCGFMVPAESAIIPHFDSIVLHMKSYDSPADGKSSFQVEMSEMRSIVVGATERSLVLIDEICRGTETAKGTCIAGSIIESLDKIGCLGIVSTHLHGIFSLPLNTSRVIYKAMGTVCNNGLTKPTWKLIDGICRESLAFETAKKEGIPESIIHRAEDLYSSFYSKEVIVGRDEINLLHLSSSVNGSDDHQVRSAKAEADSHPTKLPVEILHKEVERAIISTCHKKLTELTTEKNTLILPEIRCVLIFPREKPPPSTVGASSVYVMLRPDNKLYVGQSDDLEGRVRAHRSKEGMENASFLYFIVRGKSLACQFETLLINQLPNLGFQLTNTADGKHRNFGTSNLSVESMSIF 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38499335 38529142 - Bma015448.2 Bma02g00746 77996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00746 1035 SMART mutATP5 658 844 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bma02g00746 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 845 IPR027417 -
Bma02g00746 1035 Gene3D - 636 927 IPR027417 -
Bma02g00746 1035 SUPERFAMILY DNA repair protein MutS, domain I 28 139 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bma02g00746 1035 SUPERFAMILY GIY-YIG endonuclease 944 1007 IPR035901 -
Bma02g00746 1035 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 80 987 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bma02g00746 1035 ProSitePatterns DNA mismatch repair proteins mutS family signature. 739 755 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bma02g00746 1035 Gene3D DNA repair protein MutS, domain I 30 135 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bma02g00746 1035 CDD ABC_MutS_homologs 651 831 - -
Bma02g00746 1035 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 80 987 - -
Bma02g00746 1035 Pfam MutS domain I 41 131 IPR007695 GO:0005524|GO:0006298|GO:0030983
Bma02g00746 1035 Pfam MutS domain V 662 844 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00746 - - - pper:18791101 1593.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00746 Bma-Chr2:38499335 Bma14g02081 Bma-Chr14:44157620 1.44E-19 dispersed
Bma02g00746 Bma-Chr2:38499335 Bma07g00480 Bma-Chr7:5808604 1.48E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g793 . . . . . Bpe14g01287 . . . . . . . Car14g01656 . . Cpe03g01548 . . . . . . . . . . . . . . Cone14ag0185 . . . . . . Cme06g00444 Blo02g00683 . . Bda13g00033 . . Bma02g00746 . . . Cmo14g01893 . . . . . . . . . . . . . . . . . . . . . Csa03g01161 Chy06g00424 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00746 Bma_Chr02 FPKM 38.293781 42.220394 60.846405 62.41188 23.905016 23.167219 23.305899 38.120667 38.72974 36.165287