Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00753 ATGAACTGCTCAGTTTCCGGTGAGGTTCCGGAAGAGCCGGTTGTCTCTACGAAATCCGGATTACTCTTCGAGAAGCGTTTAATCGAGAGGCACGTTTTGGACTATGGAAAATGCCCAATTACTGGGGAATCACTAGCCATGGATGATGTTGTTCCAATTAAAACTGGGAAGATAGTGAAGCCCAGACCCGTTCAAGCGGCTAGTATCCCTGGCATGTTAGGAATGTTCCAGAATGAATGGGATGGCTTAATGCTTTCTAATTTTGCCCTTGAGCAACAATTGCATACCGCCAGACAAGAGCTAAGCCATGCTTTATACCAGCATGATGCTGCCTGTCGTGTGATTGCGAGGCTTAAAAAAGAAAGGGATGAAGCTCGATCATTACTTGCACAAGCTGAAAGGCAAATGCCTTCTGTAACATCCACACTAATTGTTACTTCTTCTTCTGTTCATAGCAATGGGAAACGAGGTGCCGAAGATGAAGAATCTGGCCCTGATGGAAAGAGAATACGCCCTGGAATTACTACAAGTATTATCTCTGAGCTTACAGACTGTAATGCTGCACTCTCACAGCAGAGGAAGAAGCGGCAGATACCAGCAACTTTGGCTCCTGTTGAGCTTTTGGAGAGCTATACCCAGATATCTAGTCACCCACTCCATAAAACAAACAAACCTGGCATTTTATCCCTTGATATTCATTATGGCAAGGACATATTTGCCACTGGAGGGCTTGACACCAATGCAGTAATTTTTGATCGACCATCTGGACAGATTTTATCTACACTTAGCGGTCATTCTAAGAAGGTGACTAGCGTAAAGTTTGTGGCACGAGATGCATTATTCTTAAGTGGTTCGGCTGATAAGACTGTTCGTGTTTGGCAAGGCTCTGATGATGGGAATTATAGTTGTAGGCATATCTTGAAGGATCACACTGCTGAGGTGCAAGCAGTTACAGTTCATGCTACGAACAACTACTTTGTGACTGCCTCTCTTGATAACACATGGTGTTTCTATGAACTTTCTTCAGGATTATGTCTAGCACAGGTCGCAGACACTTCAGGAACGGAGGGCTACACCTCGGCAGCCTTTCATCCTGATGGTCTTATCCTTGGAACAGGCACATCTGAGGCTCTTGTTAAGATTTGGGATGTAAAAAGTCAGACAAATGTTGCCAGATTTGATGGACACGTTGGGGCTGTTACTGCAATATCTTTCTCAGAGAACGGTTACTTCCTTGCAACTGCTGCTCATGATGGTGTAAAGCTGTGGGATCTACGCAAATTAAAGAACTTCCGCACATTTTCTCCATATGATTCAGATACACCAACAAACTCTGTTGAATTCGACCAAAGTGGAAGTTACCTAGCAATTGCAGGATCAGATTTAAGGGTTTACCAAGTTGCGAACGTGAAATCTGAATGGAAGTGCATTAAGACTATCCCAGATTTGTCGGGAACAGGTAAAGCAACGTGCATCAAATTCGGTCTAGATGGAAAATACTTAGCTGTAGGATCGATGGACCGAAACCTCCGGATATTTGGTTTTCCGGGAGAAGATGGTCCGATGGAGTCATAG 1575 44.13 MNCSVSGEVPEEPVVSTKSGLLFEKRLIERHVLDYGKCPITGESLAMDDVVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPSVTSTLIVTSSSVHSNGKRGAEDEESGPDGKRIRPGITTSIISELTDCNAALSQQRKKRQIPATLAPVELLESYTQISSHPLHKTNKPGILSLDIHYGKDIFATGGLDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVARDALFLSGSADKTVRVWQGSDDGNYSCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYELSSGLCLAQVADTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSDTPTNSVEFDQSGSYLAIAGSDLRVYQVANVKSEWKCIKTIPDLSGTGKATCIKFGLDGKYLAVGSMDRNLRIFGFPGEDGPMES 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38717092 38725202 - Bma015457.1 Bma02g00753 78003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00753 524 SUPERFAMILY RING/U-box 1 53 - -
Bma02g00753 524 CDD WD40 226 513 - -
Bma02g00753 524 SUPERFAMILY WD40 repeat-like 223 513 IPR036322 GO:0005515
Bma02g00753 524 MobiDBLite consensus disorder prediction 145 172 - -
Bma02g00753 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Bma02g00753 524 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 524 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Bma02g00753 524 Coils Coil 115 135 - -
Bma02g00753 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 426 - -
Bma02g00753 524 Gene3D - 202 515 IPR015943 GO:0005515
Bma02g00753 524 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Bma02g00753 524 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515
Bma02g00753 524 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Bma02g00753 524 Pfam WD domain, G-beta repeat 475 513 IPR001680 GO:0005515
Bma02g00753 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 433 IPR001680 GO:0005515
Bma02g00753 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Bma02g00753 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 392 IPR001680 GO:0005515
Bma02g00753 524 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Bma02g00753 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Bma02g00753 524 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Bma02g00753 524 MobiDBLite consensus disorder prediction 154 168 - -
Bma02g00753 524 SMART WD40_4 427 466 IPR001680 GO:0005515
Bma02g00753 524 SMART WD40_4 255 294 IPR001680 GO:0005515
Bma02g00753 524 SMART WD40_4 342 383 IPR001680 GO:0005515
Bma02g00753 524 SMART WD40_4 210 252 IPR001680 GO:0005515
Bma02g00753 524 SMART WD40_4 473 514 IPR001680 GO:0005515
Bma02g00753 524 SMART WD40_4 300 339 IPR001680 GO:0005515
Bma02g00753 524 SMART WD40_4 386 424 IPR001680 GO:0005515
Bma02g00753 524 CDD RING-Ubox_PRP19 3 54 - -
Bma02g00753 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00753 K10599 PRPF19, PRP19; pre-mRNA-processing factor 19 [EC:2.3.2.27] - vvi:100249408 917.146
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00753 Bma06g01616 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00753 Bma-Chr2:38717092 Bma04g00486 Bma-Chr4:4250811 1.62E-10 dispersed
Bma02g00753 Bma-Chr2:38717092 Bma06g01616 Bma-Chr6:52288754 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g778 . . . . . Bpe14g01276 . . . . Cma06g01297 Cma14g01841 Car06g01113 Car14g01649 Sed02g1438 Cpe08g00356 Cpe03g01541 Bhi01g00680 Tan10g0634 Cmetu06g0539 . Hepe05g1688 . Lcy11g1702 . . . . . . . Cone14ag0178 Cone15ag0188 . . Lsi05g01766 . . Cme06g00455 Blo02g00770 . Bda11g00647 Bda13g00041 . Bpe13g00538 Bma02g00753 Bma06g01616 . Cmo06g01305 Cmo14g01882 . . . . . . . . . . . . . Cla05g00413 Cam05g0451 Cec05g0458 Cco05g0459 Clacu05g0448 Cmu05g0425 Cre05g0488 . Csa03g01174 Chy06g00436 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00436 . 31 743 U-box Gene Family AT5G15400 75.5 2.1e-306 1048.5
Bma09g00589 . 1 781 U-box Gene Family AT3G54790 53.1 1.1e-134 477.6
Bma09g00003 CCT 195 824 U-box Gene Family AT2G23140 61.0 4.4e-105 379.0
Bma03g01129 CCT 194 765 U-box Gene Family AT2G23140 50.2 8.7e-69 258.5
Bma06g00574 BCT,CCT 1 756 U-box Gene Family AT1G24330 57.8 1.9e-235 812.4
Bma01g00018 BCT,CCT 1 779 U-box Gene Family AT1G24330 61.3 1.1e-222 770.0
Bma06g00574 BCT,CCT 1 758 U-box Gene Family AT1G67530 57.2 4.7e-234 807.7
Bma01g00018 BCT,CCT 1 638 U-box Gene Family AT1G67530 63.1 1.9e-219 759.2
Bma11g00359 . 1 365 U-box Gene Family AT4G21350 58.7 1.2e-115 413.3
Bma07g00336 . 1 359 U-box Gene Family AT4G21350 58.7 1.2e-115 413.3
Bma15g00525 . 134 457 U-box Gene Family AT3G07360 58.8 9.8e-77 283.9
Bma13g00879 . 1 197 U-box Gene Family AT3G07360 51.3 5.1e-49 191.8
Bma13g00880 . 18 145 U-box Gene Family AT3G07360 59.4 3.4e-37 152.5
Bma14g01592 . 240 454 U-box Gene Family AT1G71020 68.1 4.5e-78 288.9
Bma14g00501 CCT 254 421 U-box Gene Family AT1G71020 57.8 3.7e-48 189.5
Bma11g00122 CCT 255 417 U-box Gene Family AT1G71020 56.6 2.0e-46 183.7
Bma14g01592 . 1 656 U-box Gene Family AT1G23030 57.7 3.2e-121 432.6
Bma11g00122 CCT 89 633 U-box Gene Family AT2G28830 58.1 1.1e-97 354.4
Bma14g00501 CCT 92 422 U-box Gene Family AT2G28830 55.1 2.5e-91 333.2
Bma11g00122 CCT 1 626 U-box Gene Family AT3G46510 64.8 5.0e-144 508.4
Bma14g00501 CCT 1 421 U-box Gene Family AT3G46510 64.7 3.9e-141 498.8
Bma01g01714 . 9 660 U-box Gene Family AT5G01830 56.7 6.8e-197 684.1
Bma14g00979 . 1 715 U-box Gene Family AT1G29340 64.4 4.2e-229 791.2
Bma10g00130 . 8 384 U-box Gene Family AT3G52450 53.0 1.3e-111 400.2
Bma04g01537 . 1 281 U-box Gene Family AT3G52450 54.5 1.4e-78 290.4
Bma10g00130 . 8 382 U-box Gene Family AT2G35930 55.1 9.7e-114 407.1
Bma07g00208 . 3 400 U-box Gene Family AT2G35930 50.5 1.1e-112 403.7
Bma07g00213 . 3 400 U-box Gene Family AT2G35930 50.2 4.1e-112 401.7
Bma04g01537 . 1 280 U-box Gene Family AT2G35930 53.3 1.6e-76 283.5
Bma05g00512 . 1 416 U-box Gene Family AT3G19380 65.2 7.3e-149 523.9
Bma05g00512 . 1 412 U-box Gene Family AT1G49780 65.8 3.2e-152 535.0
Bma03g01153 . 1 449 U-box Gene Family AT3G49810 72.2 7.0e-182 633.6
Bma06g00334 . 1 450 U-box Gene Family AT3G49810 68.5 3.5e-173 604.7
Bma05g00028 . 1 450 U-box Gene Family AT3G49810 61.3 2.9e-151 531.9
Bma03g01153 . 1 449 U-box Gene Family AT5G65920 67.6 1.8e-166 582.4
Bma06g00334 . 1 450 U-box Gene Family AT5G65920 65.6 2.3e-161 565.5
Bma05g00028 . 1 450 U-box Gene Family AT5G65920 62.1 4.8e-151 531.2
Bma06g00885 . 1 310 U-box Gene Family AT2G19410 64.2 1.9e-118 423.7
Bma06g00885 . 52 310 U-box Gene Family AT4G25160 51.0 1.5e-68 258.1
Bma06g00200 . 23 498 U-box Gene Family AT5G40140 50.1 2.4e-59 226.9
Bma01g00699 CCT 4 813 U-box Gene Family AT1G76390 63.2 2.1e-277 951.8
Bma01g02413 CCT 13 814 U-box Gene Family AT1G76390 60.0 2.7e-261 898.3
Bma01g00699 CCT 7 813 U-box Gene Family AT1G20780 64.0 3.9e-284 974.2
Bma01g02413 CCT 14 811 U-box Gene Family AT1G20780 59.7 4.9e-263 904.0
Bma06g00574 BCT,CCT 1 758 U-box Gene Family AT1G27910 59.8 1.5e-248 855.9
Bma01g00018 BCT,CCT 1 781 U-box Gene Family AT1G27910 53.8 5.3e-222 767.7
Bma15g01111 . 1 599 U-box Gene Family AT5G67530 74.7 5.3e-262 900.2
Bma02g00753 BCT 1 524 U-box Gene Family AT1G04510 72.6 1.0e-224 776.2
Bma06g01616 BCT 2 520 U-box Gene Family AT1G04510 73.8 8.6e-224 773.1
Bma02g00753 BCT 1 488 U-box Gene Family AT2G33340 72.7 1.7e-210 728.8
Bma06g01616 BCT 2 484 U-box Gene Family AT2G33340 73.7 2.5e-209 724.9
Bma10g00429 . 10 279 U-box Gene Family AT3G07370 65.6 2.4e-103 372.1
Bma13g00881 . 7 277 U-box Gene Family AT3G07370 60.1 2.0e-94 342.4
Bma13g00876 . 7 275 U-box Gene Family AT3G07370 55.1 2.4e-79 292.4
Bma13g00877 . 1 196 U-box Gene Family AT3G07370 58.2 1.3e-64 243.4
Bma13g00875 . 1 196 U-box Gene Family AT3G07370 57.1 1.1e-63 240.4
Bma13g00874 . 1 196 U-box Gene Family AT3G07370 54.1 5.1e-58 221.5
Bma02g00436 . 31 743 U-box Gene Family AT5G15400 75.5 2.1e-306 1048.5
Bma09g00589 . 1 781 U-box Gene Family AT3G54790 53.1 1.1e-134 477.6
Bma09g00003 CCT 195 824 U-box Gene Family AT2G23140 61.0 4.4e-105 379.0
Bma03g01129 CCT 194 765 U-box Gene Family AT2G23140 50.2 8.7e-69 258.5
Bma06g00574 BCT,CCT 1 756 U-box Gene Family AT1G24330 57.8 1.9e-235 812.4
Bma01g00018 BCT,CCT 1 779 U-box Gene Family AT1G24330 61.3 1.1e-222 770.0
Bma06g00574 BCT,CCT 1 758 U-box Gene Family AT1G67530 57.2 4.7e-234 807.7
Bma01g00018 BCT,CCT 1 638 U-box Gene Family AT1G67530 63.1 1.9e-219 759.2
Bma11g00359 . 1 365 U-box Gene Family AT4G21350 58.7 1.2e-115 413.3
Bma07g00336 . 1 359 U-box Gene Family AT4G21350 58.7 1.2e-115 413.3
Bma15g00525 . 134 457 U-box Gene Family AT3G07360 58.8 9.8e-77 283.9
Bma13g00879 . 1 197 U-box Gene Family AT3G07360 51.3 5.1e-49 191.8
Bma13g00880 . 18 145 U-box Gene Family AT3G07360 59.4 3.4e-37 152.5
Bma14g01592 . 240 454 U-box Gene Family AT1G71020 68.1 4.5e-78 288.9
Bma14g00501 CCT 254 421 U-box Gene Family AT1G71020 57.8 3.7e-48 189.5
Bma11g00122 CCT 255 417 U-box Gene Family AT1G71020 56.6 2.0e-46 183.7
Bma14g01592 . 1 656 U-box Gene Family AT1G23030 57.7 3.2e-121 432.6
Bma11g00122 CCT 89 633 U-box Gene Family AT2G28830 58.1 1.1e-97 354.4
Bma14g00501 CCT 92 422 U-box Gene Family AT2G28830 55.1 2.5e-91 333.2
Bma11g00122 CCT 1 626 U-box Gene Family AT3G46510 64.8 5.0e-144 508.4
Bma14g00501 CCT 1 421 U-box Gene Family AT3G46510 64.7 3.9e-141 498.8
Bma01g01714 . 9 660 U-box Gene Family AT5G01830 56.7 6.8e-197 684.1
Bma14g00979 . 1 715 U-box Gene Family AT1G29340 64.4 4.2e-229 791.2
Bma10g00130 . 8 384 U-box Gene Family AT3G52450 53.0 1.3e-111 400.2
Bma04g01537 . 1 281 U-box Gene Family AT3G52450 54.5 1.4e-78 290.4
Bma10g00130 . 8 382 U-box Gene Family AT2G35930 55.1 9.7e-114 407.1
Bma07g00208 . 3 400 U-box Gene Family AT2G35930 50.5 1.1e-112 403.7
Bma07g00213 . 3 400 U-box Gene Family AT2G35930 50.2 4.1e-112 401.7
Bma04g01537 . 1 280 U-box Gene Family AT2G35930 53.3 1.6e-76 283.5
Bma05g00512 . 1 416 U-box Gene Family AT3G19380 65.2 7.3e-149 523.9
Bma05g00512 . 1 412 U-box Gene Family AT1G49780 65.8 3.2e-152 535.0
Bma03g01153 . 1 449 U-box Gene Family AT3G49810 72.2 7.0e-182 633.6
Bma06g00334 . 1 450 U-box Gene Family AT3G49810 68.5 3.5e-173 604.7
Bma05g00028 . 1 450 U-box Gene Family AT3G49810 61.3 2.9e-151 531.9
Bma03g01153 . 1 449 U-box Gene Family AT5G65920 67.6 1.8e-166 582.4
Bma06g00334 . 1 450 U-box Gene Family AT5G65920 65.6 2.3e-161 565.5
Bma05g00028 . 1 450 U-box Gene Family AT5G65920 62.1 4.8e-151 531.2
Bma06g00885 . 1 310 U-box Gene Family AT2G19410 64.2 1.9e-118 423.7
Bma06g00885 . 52 310 U-box Gene Family AT4G25160 51.0 1.5e-68 258.1
Bma06g00200 . 23 498 U-box Gene Family AT5G40140 50.1 2.4e-59 226.9
Bma01g00699 CCT 4 813 U-box Gene Family AT1G76390 63.2 2.1e-277 951.8
Bma01g02413 CCT 13 814 U-box Gene Family AT1G76390 60.0 2.7e-261 898.3
Bma01g00699 CCT 7 813 U-box Gene Family AT1G20780 64.0 3.9e-284 974.2
Bma01g02413 CCT 14 811 U-box Gene Family AT1G20780 59.7 4.9e-263 904.0
Bma06g00574 BCT,CCT 1 758 U-box Gene Family AT1G27910 59.8 1.5e-248 855.9
Bma01g00018 BCT,CCT 1 781 U-box Gene Family AT1G27910 53.8 5.3e-222 767.7
Bma15g01111 . 1 599 U-box Gene Family AT5G67530 74.7 5.3e-262 900.2
Bma02g00753 BCT 1 524 U-box Gene Family AT1G04510 72.6 1.0e-224 776.2
Bma06g01616 BCT 2 520 U-box Gene Family AT1G04510 73.8 8.6e-224 773.1
Bma02g00753 BCT 1 488 U-box Gene Family AT2G33340 72.7 1.7e-210 728.8
Bma06g01616 BCT 2 484 U-box Gene Family AT2G33340 73.7 2.5e-209 724.9
Bma10g00429 . 10 279 U-box Gene Family AT3G07370 65.6 2.4e-103 372.1
Bma13g00881 . 7 277 U-box Gene Family AT3G07370 60.1 2.0e-94 342.4
Bma13g00876 . 7 275 U-box Gene Family AT3G07370 55.1 2.4e-79 292.4
Bma13g00877 . 1 196 U-box Gene Family AT3G07370 58.2 1.3e-64 243.4
Bma13g00875 . 1 196 U-box Gene Family AT3G07370 57.1 1.1e-63 240.4
Bma13g00874 . 1 196 U-box Gene Family AT3G07370 54.1 5.1e-58 221.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004919 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00753 Bma_Chr02 FPKM 5.137011 6.931426 7.313669 6.929473 1.163998 0.805174 1.329966 15.114336 15.178368 14.530848