Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00780 GCTTCATTTTCTACAGTTTCTGAGTTTTTTTCTGATAATTCTTTGCGGGTCCATCTTCGTTCTTTCCCTCGCAACTCTCCCCCTCCAAATGCCAGAAGCCTTCGGAAGATTGCCGTTAGTGCCAAACAAGCTCATACCAGTCCATTGCAGTGCCGGAAGCTCGGTGATTCTGACCTTCTAATTAGCGAAATTACTCTCGGAACGATGACCTTTGGACAGCAAAATACGGAAAAAGAAGCTCACGAGTTGCTTAGTTACGCTTTTGAAAATGGCATCAATATTCTGGATACTGCAGAGTCATATCCAATTCCCATGAAAAAGGAGACTATGGGAAAAACTGACCTTTACATTGGTAGTTGGCTCAAGTCCCAACCCCGTGATAAGATTATTTTGGCGACAAAAGTTTGTGGTTATTCAGAGCATTCAACTTATTTGCGTGACAATGCCACTGTTTTGCGGGTTGATCGTGCAAATATAAGAGAAAGTGTAGAGAAAAGTCTCAAGCGGCTAAACACTGATTACATTGACTTACTGCAAATACATTGGCCAGATCGCTATGTGCCTCTGTTTGGTGAATTTTATTATGATCCTGCTAAATGGAGACCGAGTGTGTCATTTGTTGAGCAACTGAAGGCATTTCAGGAACTCATCGATGAAGGAAAGGTACGCTATATTGGAGTTTCGAATGAAACTTCCTATGGAGTTATGGAGTTTGTTCATGCAGCAAAGGTTGAAGGACTACCAAAGATCGTTAGTATCCAAAACAGTTACAGCCTTCTGGTTAGATGTCGTTATGAAGTTGATCTTGTTGAAGTTTGCCATCCAAATAATTGCAATATTGGTTTACTTGCGTACTCCCCACTTGGCGGTGGATCACTGAGCGGAAAATACTTGGATCCAAATTCGGAAGCTGCAAGAAAAGGAAGGCTCAATCTCTTTCCAGCCTACATGGATAGATACAACAAATCTATTGCTAGGGAAGCAACAATAGAATATCAACAGTTGGCCAAAAAACACGGCCTAACTTTAGTTCAGCTTGCGCTCGGATTTGCCAGAGACCGACCATTTATGACCAGTGCAATTATAGGTGCGACATCCATTGATCAGTTGAAAGAAGACATCGAAGCTTACGTGGGAACTGAGCGGCCTTTGCGGGGTGAAGTGGTGGATGATATTCAGAGTCTTTTTAAGAGGTACAAAGATCCTGCGATC 1212 42.49 ASFSTVSEFFSDNSLRVHLRSFPRNSPPPNARSLRKIAVSAKQAHTSPLQCRKLGDSDLLISEITLGTMTFGQQNTEKEAHELLSYAFENGINILDTAESYPIPMKKETMGKTDLYIGSWLKSQPRDKIILATKVCGYSEHSTYLRDNATVLRVDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGEFYYDPAKWRPSVSFVEQLKAFQELIDEGKVRYIGVSNETSYGVMEFVHAAKVEGLPKIVSIQNSYSLLVRCRYEVDLVEVCHPNNCNIGLLAYSPLGGGSLSGKYLDPNSEAARKGRLNLFPAYMDRYNKSIAREATIEYQQLAKKHGLTLVQLALGFARDRPFMTSAIIGATSIDQLKEDIEAYVGTERPLRGEVVDDIQSLFKRYKDPAI 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41377884 41381974 - Bma030901 Bma02g00780 78030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00780 404 CDD AKR_Tas-like 61 392 - -
Bma02g00780 404 Gene3D - 49 404 IPR036812 -
Bma02g00780 404 PRINTS Aldo-keto reductase signature 213 230 IPR020471 GO:0016491
Bma02g00780 404 PRINTS Aldo-keto reductase signature 165 183 IPR020471 GO:0016491
Bma02g00780 404 PANTHER NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED 45 404 - -
Bma02g00780 404 PANTHER - 45 404 - -
Bma02g00780 404 Pfam Aldo/keto reductase family 63 394 IPR023210 -
Bma02g00780 404 SUPERFAMILY NAD(P)-linked oxidoreductase 49 399 IPR036812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00780 - - - vvi:100259668 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00780 Bma-Chr2:41377884 Bma02g00999 Bma-Chr2:50616426 7.27E-24 dispersed
Bma02g00780 Bma-Chr2:41377884 Bma10g01036 Bma-Chr10:27997929 1.48E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g715 . . . . . Bpe14g01257 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0324 . . . . . . . . Bda13g00060 . . Bma02g00780 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011274 1 1 0 1 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 0 1 2 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00780 Bma_Chr02 FPKM 0.673868 1.198587 0.704494 1.500869 0.527389 0.0 0.753003 1.477071 0.636072 1.453264