Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00783 TGGAATATCTGGTTTTTGTTGCAGACAAATGCATCATCAGGCATGGGCTTAGCCGACCACAGCAAAAGAACATTTATGGAACTTCAAAGGAAGAAGGTGCACCGTTACGTGATTTTTAAGATTGAGGAAAAGAAGAAAGAGGTAGTGGTAGAGAAGACTGGAGGACTAGCAGAGAGCTATGATGATTTCTCTGCGTCGTTGCCCGAAAACGACTGTCGGTATGCAGTTTATGACTTTGATTATGTGACTACCGATAACTGCCAAAAGAGCAAGATCTTCTTTATAGCATGGTCACCCTCGGTATCCCGAGTCCGTTCGAAGATGCTGTATGCAACATCGAAGGACAGGTTCAGAAGGGAATTGGAGGGCATCCATTACGAGATCCAGGCCACCGACGAAACCGAGATGGATCTTGAAGTCCTTAGAGACCGAGCAAACTGA 441 45.58 WNIWFLLQTNASSGMGLADHSKRTFMELQRKKVHRYVIFKIEEKKKEVVVEKTGGLAESYDDFSASLPENDCRYAVYDFDYVTTDNCQKSKIFFIAWSPSVSRVRSKMLYATSKDRFRRELEGIHYEIQATDETEMDLEVLRDRAN 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41662365 41662892 + Bma015510.1 Bma02g00783 78033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00783 146 Gene3D Severin 10 146 IPR029006 -
Bma02g00783 146 SMART adf_2 19 146 IPR002108 GO:0003779
Bma02g00783 146 Pfam Cofilin/tropomyosin-type actin-binding protein 23 143 IPR002108 GO:0003779
Bma02g00783 146 ProSiteProfiles ADF-H domain profile. 12 146 IPR002108 GO:0003779
Bma02g00783 146 SUPERFAMILY Actin depolymerizing proteins 8 144 - -
Bma02g00783 146 PANTHER COFILIN-RELATED 7 146 IPR017904 GO:0015629|GO:0030042
Bma02g00783 146 CDD ADF_cofilin_like 13 145 IPR017904 GO:0015629|GO:0030042
Bma02g00783 146 PANTHER ACTIN-DEPOLYMERIZING FACTOR 6 7 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00783 K05765 CFL; cofilin - qsu:112026343 239.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00783 Bma-Chr2:41662365 Bma15g00640 Bma-Chr15:9147420 2.66E-70 dispersed
Bma02g00720 Bma-Chr2:31252469 Bma02g00783 Bma-Chr2:41662365 8.32E-60 transposed
Bma02g00783 Bma-Chr2:41662365 Bma09g00595 Bma-Chr9:43111506 6.67E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g705 . . . . . Bpe14g01254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00063 . . Bma02g00783 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003181 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 2 3 2 1 1 1 1 2 1 1 2 2 3 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00783 Bma_Chr02 FPKM 5.81733 6.316477 8.734097 12.988835 21.162876 20.892061 18.81699 12.622554 13.768341 12.934093