Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00790 ATGGATTCCGACTTCTCGCCGCAATCTTCGTTTGGGTCGCCAGATGTCTCTGCGTGGGAATGGGATGGTTTTGAATTTGGTAATGGTACTCTGCCTTTCAATGAAAATGATTCTGAAGAAATGCTTCTGTATGGACTTCTATCTGAGGCCAGAGAAGAAGTGTCAGACAGAATTGAGGTAGAAGAGGTCGTTTCAGAATCCAACGGAAACCCCATAAAGGATAAGTGCTTCAGAGGAGTGAGAAAGCGGCCGTGGGGGAAATTTGCGGCGGAGATAAGAGATTCAACGAGAAATGGCGTAAGGGTCTGGTTGGGAACGTTCGATAGCGCTGAAGCAGCAGCGTTGGCTTACGATCAAGCCGCTTTTGCAATGAGGGGATCGGCGGCGATCCTCAATTTTCCAGTGGAACGAGTGAGAGAATCACTTGAAGCGATGAACTGTAGAGTATCCGACGGAGGCGGCTCTCCGGTGATGGCTCTGAAAAGAAAGCATTCAATGAGAAGGAAATACGGAGGGAAGAAAAACAAAGAGAGAGAGGGGAAGATTGAAAATGTAGTGGTGTTTGAGGATTTAGGAGCAGATTATTTGGAAGAACTTTTGAGATCATCTGAGAATTAG 618 46.6 MDSDFSPQSSFGSPDVSAWEWDGFEFGNGTLPFNENDSEEMLLYGLLSEAREEVSDRIEVEEVVSESNGNPIKDKCFRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFAMRGSAAILNFPVERVRESLEAMNCRVSDGGGSPVMALKRKHSMRRKYGGKKNKEREGKIENVVVFEDLGADYLEELLRSSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42253358 42253975 - Bma015520.1 Bma02g00790 78040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00790 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 202 - -
Bma02g00790 205 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Bma02g00790 205 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Bma02g00790 205 PANTHER DNA-BINDING DOMAIN 28 202 IPR044808 GO:0003700|GO:0009873
Bma02g00790 205 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Bma02g00790 205 SUPERFAMILY DNA-binding domain 76 136 IPR016177 GO:0003677
Bma02g00790 205 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Bma02g00790 205 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Bma02g00790 205 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Bma02g00790 205 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00790 Bma-Chr2:42253358 Bma13g00432 Bma-Chr13:8000882 1.67E-61 dispersed
Bma02g00790 Bma-Chr2:42253358 Bma05g01068 Bma-Chr5:49419731 3.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56892 PF00847 AP2 1.70E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00790 K14516 - jre:109007057 261.151