Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00795 GATTACCTAAAAACTGTCGTGCCCTCACAGCTTATTTCCGAAAGAGGATCAAATTTGGTCGTTCTAAACCCAGGTTCTGCCAATGTAAGGATAGGCATAGCTTCACAGGACACTCCTTTAATTATTCCTCATTGCATTGCTCGGCATACTAATCAAGTCCCCGTGCGTAAGCGAAATGTTCAAGATCAGATGCTGAATTCACCAATTACAACTGCACAACACATGGACCGTGAGAAGGCATATGATAACATAGCGTCATTATTAAAGATACCATTTTTGGATGAAGAGGTAGCCAGTAATCCCTTCCCACGAAAGATGGGACGTGTTGATGGAAATAATCTTGCAAACAATAGGAAGGAGACACCCTTCACTTGGGCTAATATATATGAGGAGGGGCCTGTTTCGTCTTTGGCTTCAGAGAGCTCCGGGTCGAAGGATGGGGTGAATGAGTCCTTGGATCAAGGTGAAAGTTGTGCTCCTGAAGAGCTTAATGCAAGCACACCTAAATACAAAGAGTTTATTTGTGGCGAGGATGCACTTAAAATATCCCCCATGGAGCCATATTGCCTACACCGTCCTATTCGCAGAGGTCATTTCAATATTTCACAACATTACCCTATGCAGCAGGTATTTGAGGACTTGCATGCTATATGGGACTGGATTTTGATGGAGAAGTTGCATATTTCTCACAATGAAAGAAGCATGTACTCTGCTGTAATTGTTGTGCCAGAATCATTTGACAATCGTGAAATAAAAGAGATATTGACCATAGTCTTGAGAGACTTGCATTTTACCTCAGCAGTTGTACATCAGGAAGCTATTGCAACCGTTTTTGGGAATGGGTTATCTACTGCATGCATCGTCAATATGGGAGCTCAGGTGACATCAGTTACTTGCATCGAGGATGGAGTTGCTCTGCCTAATACTGAGAAGACTTTACCGTTTGGTGGAGAGGATATATCAAGATGCCTTCTTTGGACTCAAAGACATCATCAGACATGGCCACCAATTCGAACTGACCTTTTGACAAAACCTATTGATCTCTTGATGCTTAACAGACTAAAAGAGTCGTATTGTGAGATTCAGGAGGGAGAGCTTGATGCTGTTGCGGTAGTTCACTCTTATGAAGATGGAATTCCACCTGGATCTCACAAGACTAGGTTGACTGCCCTGAATGTACCACCTATGGGTTTGTTCTACCCAATGCTTTTGGTACCTGATGTGTATCCTCCACCACCTCGTTCTTGGTTTCATGACTACGAGGATATGCTGGAGGATACGTGGCACATGGAATTTCCCAGAAGGCCAGATATATCAGATGGATTGTATGCTGGCTATAACGTTAATTTACCGATGTGGGAGAATTACCCAGTTTTTGCTTCTAAACCAAAGAAAGAAGAGAAGGTCGGAATTGCAGAAGCTATCACCAGCAGCATTCTTTCCACTGGACGTATAGACCTTCAAAGGAAATTGTTTTGTAGCATACTCTTGGTTGGTGGGGTGGCATTGACAAATGGTCTAGTTCCTGCAGTGGAGGATAGAGTTTTGCTTACAATCCCAGCAAATGAAGCAATTGATACTGTGGAGGTTTTGCCATCGAGAACCAATCCAGCTTTTGTGTCATGGAAAGGTGGAGCGATTCTGGGAGTTCTTGATGTTGGTCGAGAGGCTTGGATACATCGTGAGGACTGGATAAACAATGGAATCCATATAGGCAGTGGACGAAAATACAAAGATTCTTATTATCTTCAAGCACAAGCAATGTGCTACATAAATTCATAA 1782 42.82 DYLKTVVPSQLISERGSNLVVLNPGSANVRIGIASQDTPLIIPHCIARHTNQVPVRKRNVQDQMLNSPITTAQHMDREKAYDNIASLLKIPFLDEEVASNPFPRKMGRVDGNNLANNRKETPFTWANIYEEGPVSSLASESSGSKDGVNESLDQGESCAPEELNASTPKYKEFICGEDALKISPMEPYCLHRPIRRGHFNISQHYPMQQVFEDLHAIWDWILMEKLHISHNERSMYSAVIVVPESFDNREIKEILTIVLRDLHFTSAVVHQEAIATVFGNGLSTACIVNMGAQVTSVTCIEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPPIRTDLLTKPIDLLMLNRLKESYCEIQEGELDAVAVVHSYEDGIPPGSHKTRLTALNVPPMGLFYPMLLVPDVYPPPPRSWFHDYEDMLEDTWHMEFPRRPDISDGLYAGYNVNLPMWENYPVFASKPKKEEKVGIAEAITSSILSTGRIDLQRKLFCSILLVGGVALTNGLVPAVEDRVLLTIPANEAIDTVEVLPSRTNPAFVSWKGGAILGVLDVGREAWIHREDWINNGIHIGSGRKYKDSYYLQAQAMCYINS 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42736415 42743414 + Bma015527.1 Bma02g00795 78045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00795 593 SMART actin_3 17 581 IPR004000 -
Bma02g00795 593 PANTHER ACTIN 7 576 IPR004000 -
Bma02g00795 593 Pfam Actin 18 570 IPR004000 -
Bma02g00795 593 Gene3D - 421 573 - -
Bma02g00795 593 Gene3D Actin; Chain A, domain 4 303 404 - -
Bma02g00795 593 MobiDBLite consensus disorder prediction 136 151 - -
Bma02g00795 593 MobiDBLite consensus disorder prediction 136 161 - -
Bma02g00795 593 Gene3D - 119 302 - -
Bma02g00795 593 Gene3D - 11 106 - -
Bma02g00795 593 PANTHER ACTIN-RELATED PROTEIN 8 7 576 IPR027668 GO:0006338|GO:0031011
Bma02g00795 593 SUPERFAMILY Actin-like ATPase domain 281 572 IPR043129 -
Bma02g00795 593 SUPERFAMILY Actin-like ATPase domain 17 288 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00795 K11673 ACTR8, ARP8, INO80N; actin-related protein 8 - jre:108986152 999.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00795 Bma-Chr2:42736415 Bma12g00933 Bma-Chr12:41011392 1.12E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g649 . . . . . Bpe14g01242 . . . . . . Car06g01148 . . Cpe08g00323 Cpe03g01507 . . . . . . . . . . . . . . . . . . . . . Cme06g00511 Blo02g00729 . . Bda13g00075 . . Bma02g00795 . . . . . . . . . . . . . . . . . Cla05g00459 Cam05g0500 Cec05g0514 Cco05g0514 Clacu05g0501 Cmu05g0477 Cre05g0541 . Csa03g01232 Chy06g00485 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011275 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00795 Bma_Chr02 FPKM 3.62249 8.122392 14.638583 11.52122 3.250069 7.263913 7.016809 4.004916 6.559201 6.160329