Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00799 CTGGCTAACCCATGGTGGAGCGCTCAGGTGGGAGGGCTGGGGATGGACCCTGCAGCCCATTCGCCGCAGCTGAAACAAGACAACGGCGAGATTTCGATTAACAGCGCCGGCCGAAGAAATTGTCGAAGCAGAGAAGAAGAAGAAGAAGAAAGAGAAAATGGAGAAGCTGGTGTTGAAGTTGGAACTAAGAGGCCCAGAGGTCGACCTCCTGGCTCTAAAAACAAACCGAAACCACCGGTTATTATCGATCGGGATGCCCCCCACTCTCTTCGAAGTATAGTAATGGAGGTGGCTACCGGCGCCGATATTGCAGAGAGCATCGCGGAATACGCTCGACGGCGCCGGCGAGGCATTTGCGTTCTAAGCGCAAACGGTTCGGTAGCAAACGTCACTCTAACTCAGCCCGCCGCACAGGGCACGTCATTGGCTCTTTACGGGAGGTTCGAGATTCTTTCATTGTCAGGGACTTTCTTACCTGATCCAGCCCTTCAGGGGTCCAATGGGTTGAAGGTCTACTTAGCCGGAGCTCAGGGGCGGGTGGTCGGAGGAACTGTTGTTGGGTCGCTAGTTGCCGCTGGGACAGTAATAATTATTGCTGCAATTTTCTCTAATGCAATTTACCAGAGATTGCCTATGGAAGAAGATGATCCAGAAAGAGAAAGCGGCGAATATGATGTCGGAATAGATCAGCCCCGGCTGATTGATCCGTCGACGATGGCACTCTACACCTCTAATTTACCATCAAATCTAGTTTCTAATGAGCAGTCTGATGTATATAACTGGACTCAGCCGAGGTCAAGTTAG 804 51.49 LANPWWSAQVGGLGMDPAAHSPQLKQDNGEISINSAGRRNCRSREEEEEERENGEAGVEVGTKRPRGRPPGSKNKPKPPVIIDRDAPHSLRSIVMEVATGADIAESIAEYARRRRRGICVLSANGSVANVTLTQPAAQGTSLALYGRFEILSLSGTFLPDPALQGSNGLKVYLAGAQGRVVGGTVVGSLVAAGTVIIIAAIFSNAIYQRLPMEEDDPERESGEYDVGIDQPRLIDPSTMALYTSNLPSNLVSNEQSDVYNWTQPRSS 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42840999 42841802 + Bma015532.1 Bma02g00799 78049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00799 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 254 IPR014476 GO:0003680
Bma02g00799 267 MobiDBLite consensus disorder prediction 39 62 - -
Bma02g00799 267 CDD DUF296 91 177 IPR005175 -
Bma02g00799 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 203 IPR005175 -
Bma02g00799 267 Gene3D - 90 219 - -
Bma02g00799 267 PIRSF ESCAROLA 10 264 IPR014476 GO:0003680
Bma02g00799 267 PANTHER DNA-BINDING PROTEIN-LIKE 22 254 - -
Bma02g00799 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 215 - -
Bma02g00799 267 ProSiteProfiles PPC domain profile profile. 87 227 IPR005175 -
Bma02g00799 267 MobiDBLite consensus disorder prediction 12 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00799 Bma-Chr2:42840999 Bma02g01165 Bma-Chr2:53776721 1.38E-65 dispersed
Bma02g00799 Bma-Chr2:42840999 Bma04g00746 Bma-Chr4:8030831 7.10E-72 wgd
Bma02g00799 Bma-Chr2:42840999 Bma05g01075 Bma-Chr5:49485995 4.33E-81 wgd
Bma02g00799 Bma-Chr2:42840999 Bma06g01590 Bma-Chr6:52144263 3.18E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00799 - - pop:7467535 278.1