Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00804 ATGCCCAATAGAAATGATGCTGGATTAGCTGCAGCAGAGCTAGCACTGGCAGTTGAGAAGCATGTGTTAGAATCTGGATCCATTGATACAGTTGGGACAGTTGGTATTCTCGAGCTCCACCCGGGAGCAATCAACAGCATTCCCAGCAAATCACACCTCGAAATAGACACTAGAGACATTGATGAAGAGCGAAGAAACAGTGTAATCGATAAAATTCATCAGTCTGCAATTGCAATTGCTAAAACTCGCAAGGTCAAGCTCTCTGAATTCAAGATCATTAATCAGGACCCACCAGCACAGTCTTGCAAGTCAATAATCGAGGCCATGCAAGCTGCGTCAAAAGATACTAACCTCACGCACAAGTTGATGATTAGTAGAGCTTACCATGATTCGTTATTCATGGCTCGAATATCTCCGATGGGGATGATATTTATTCCATGTTACAAAGGGTACAGCCACAGACCTGACGAATATGCATCCATTAATGATATGGCTAATGGAGTGAAGGTGTTAGCTCTCACCCTTGCCCGATTGTCCCTGCAGTGA 546 44.14 MPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEERRNSVIDKIHQSAIAIAKTRKVKLSEFKIINQDPPAQSCKSIIEAMQAASKDTNLTHKLMISRAYHDSLFMARISPMGMIFIPCYKGYSHRPDEYASINDMANGVKVLALTLARLSLQ 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43555578 43556629 + Bma015540.1 Bma02g00804 78054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00804 181 SUPERFAMILY Zn-dependent exopeptidases 106 178 - -
Bma02g00804 181 SUPERFAMILY Bacterial exopeptidase dimerisation domain 3 94 IPR036264 -
Bma02g00804 181 PANTHER ALLANTOATE DEIMINASE-RELATED 1 174 - -
Bma02g00804 181 Pfam Peptidase family M20/M25/M40 34 176 IPR002933 GO:0016787
Bma02g00804 181 Gene3D Zn peptidases 48 181 - -
Bma02g00804 181 PANTHER ALLANTOATE DEIMINASE-RELATED 1 174 IPR010158 GO:0016813
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00804 K18151 UAH; ureidoglycolate amidohydrolase [EC:3.5.1.116] - cit:102621156 304.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00804 Bma-Chr2:43555578 Bma07g00878 Bma-Chr7:30030256 5.05E-13 dispersed
Bma02g00804 Bma-Chr2:43555578 Bma02g00805 Bma-Chr2:43617615 4.54E-129 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g622 . . . . . Bpe14g01231 . . . . . . Car06g01157 . . Cpe08g00313 . . . . . . . . . . . . . . . . Cone15ag0143 . . Lsi05g01678 . . Cme06g00537 Blo02g00611 . . Bda13g00085 . . Bma02g00804 . . Cmo06g01351 . . . . . . . . . . . . . . Cla05g00480 Cam05g0522 Cec05g0535 Cco05g0536 Clacu05g0522 Cmu05g0494 Cre05g0560 . Csa03g01255 Chy06g00509 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011290 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00804 Bma_Chr02 FPKM 27.436199 29.7393 18.91449 19.865452 19.134436 18.19392 19.437632 11.746519 10.954697 11.130645