Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00807 ATGAATGAAGAAATTGTGCAGACAGATCCAGCAACTGAGTTACAGCTTGATCTGGCTTATTTGCATCAGTACAACGAAAACATATTGAACAGTGATTCAGGTGCAGGTGTAAATGCGGGTTCAATGGTTGACATTGCATTTGTCACCACTGATCCCCTGTCTGAATTAGTATGGTCTCCACATAAAGGTTTAAGTCTCAAATGTGCTGATTTTAGCTTTGGTAATAGAAAGCCTTCTATGTTAAGGGGTGTTGGACCAAGTAATATGAATCTTGCCCTCGCAGAGAGTATTACAGCTGAGAAGTCTTATTCTGGGAAACTAGTACAAGATAGAATTTTATCACCTCATTCACAGAATGAATGCGACAGCAAAGATATATCAACTGGGTCAGACATGGGTGATATTGGTGCATCATTAAGCAGATCGGGGCATTTCCTCGACAAAGGAATTAGTTGTCAGGCAGAAGAAATAAATAACACAGCTGGAGTCTCATTTCCTTGCTTCAAACAAGAGGAGGATCGTCCTGACATTGTCGTAGAGGAAGTTGCTGATCCAATAATCACACAGATGGTTGAAGCAGCTGAAATGATAGAAAACAAGTCTTTGGTCTTGACAGGACATGTAAATGAAAGAAAAGCTGACGTCCTATTCGCTGAAAGAGATGATATTGAGCCTGTTATAGCACGACCTGAAAAACCCACTGATCTTACTGGAGAAAACAGTGTTGCAGGATGTGGCAAAATGATGATGGATATTGATGATGCTGTAGCATTTAAAGCTCATGTGCTAGAGGAATGTCAACTTTCGGGTTCTCAGCCACAGAATCCAGATCCCTCAAGCGCACGGCCTTTAGAGAAACGGGAATCAACTGCAGAAAATGAGTTACAGAAATTAAATAATGAAAATGGTTGTGATGAGCCCGAGAAAATCGAAGCAGCAGATTCACTCCGCCACCAGCCAGTTGAAAAGTTCCGATCTATTGAAGAGTCTGTTGCCGCTGACCGTTCGCCCTCAAACAGCAGAATCCATAAGAAAAGAATGAAAGGCAAGAAAAAGGCATTGTTTGATGGACATGGTGATGGCAGAAATTCGAATGATAAAGGTGACAGCTATGAAAGCGTTGAAAGCTGCAACAGTGCAGAAATATTTTGTAGGGGAAAAAAGATATGGAATAAGAAACAGTTGGTCGTGGAACGTAGTAGAGTTGAAAACCAAATTCATGATTCCACAGTGTCAACATCTGTTATAGGAAAAGACAGCTCTTTTATGATTTGGATATCAAATATGATGAAAGGGTTCCCAAAGTCAATTCCAGAGAAGGAATCTTCTCTTGCTCTTACCCATGCACATTCTGATAATGAACACAACGACTCTAACAAGGAATCTCTGATATGGAAGAAAAATCAAGACCTACAGCACCAGCGAATGGGTTTTCAATCAATTTTTCGGTCTTTGTATGGTCTGAGCACAAAGGGTCAACATTTATTGTCTCATAATGCCCATAACGAGGAAGAGGAGAGATCTGAGGATTATATTAAAGAGGCCTATGATGCGGATGCTACTTCATTGGCGTTCCATAAAGAGAACAGTAATTCTTGTGGACAAGTGATTCTTACAAGCCAGAACCTTAACAAATCTACATTGGGAAACGAAAATAATGAATCTGTATCAGGAAACAGTGCAGATGTCGCTATAAGGCCCAATGCTCGCATTCATGAGAGTCAGATGGCTGCGCCAGGAGAAAGGAGAGTTGCATGCAATTCTCCTCCTATAATTGGTGAGGGTAAATTTGAAATGAGCTCCAGTTCTTCCTTGCCCCGGAAGAGAAAGAGTGTTGAGAATATTGACTCTGTGGCACCATCTGAAGTAAAGACTAATCTCAGTTTAGGTAATGCAGGTAAACATCTTAAAAGCTTATGGATTACTCGGTTATCTATGAAAAGCTCACAAGCGGTGGCAAATCTAGATTCTGAGGACCAAAACATAAATGACCGTCTTCAGTGCGGAAGTCATATTCTGTGTTCTCAGAACCAGGTTGATTTTACTAGTGAACAAAAAGAGCAAACAAGCGATGAACCACATAGTATCTCGAAAGGAGAAATGAATAGATGTACACTGTATTCTGAGTGTACTACTGGTTTTGATAGAATTGAAGGCCACAATAATCAGTCATTTGCAAATAAGTTCAATCCTATGTTGCCTGCAACTAGATCCAGAAGGTCTGTCATGGCGTCTGTCTTTTCTAGGAGATTAGATGCCTTAAAACACATCCCATCAAACATAAGAGAAATTAGCACTGACCAAAGGATGATATGTTTCTTTTGTGGCTTAAGAGGTCATCATTTACAAGATTGTTCAGAAGTAGCTGAAAGTGAAGTTGTTGAGCACCTTTCAAAGATTCCAGGCTTATTTGACGGGGCTGCTGAAGTCTCTTGTTTGTGCATTAGATGTTTTCAGCTCAATCACTGGGCCGTTTCTTGTCCTCAGAGTAGAGCTCAGTATCATCCTGAATCTAATTGTTCTTTGGTTAATCATTTCGGGAATGGGGATAAGCAACCTTCAAACAGTGGGTTAAATACCAAGTTTCTAGTTGGTGATAGTAGCAAACCTCAACCTCCTACGTGCATTAAAAATCATATTAATGATCCTGAACTGGATGATCATAACCTGAGAAGCAAGCCAGTACATAATAAGAACCCTGAACAACTGAGAACTATTGAGGATTCCAACGAAAGATTCATGGCTTCAAATTGTATGGAGAAAAAAGAATCCGAGATAGTTCGATTTACTACGATAGATGTACGTGGAGTTTTCGATATGATAAAGAAGCTTCAATTGTCCCGCACAGACATTCTAAAATGGATGAACTCCAATATGTCACTGGTCAAACTTGAGGGTTTATTCTTGCGTCTACGGCTTGGAAAGTGGGAAAAAGGATATGGAGGCACCGGATACCATGTGGCTTTTGTAACGGGGACACAGAATGCCAGAAATTCTATCTCCGTGAATGTCGGAGGCATAGAATGCTTAACCCAAAGTCAATCTATCTCCAATCACGATTTCCTTGAGGAGGAGCTGAAAGTATGGTGGCATGCAACATCAAAAGATAGAAGCCGAGATATAGTTGAAGCAGATTTGAAAGCCAAATTAAAGAAGAAAAGGCTTTTAGGATTATAG 3177 40.35 MNEEIVQTDPATELQLDLAYLHQYNENILNSDSGAGVNAGSMVDIAFVTTDPLSELVWSPHKGLSLKCADFSFGNRKPSMLRGVGPSNMNLALAESITAEKSYSGKLVQDRILSPHSQNECDSKDISTGSDMGDIGASLSRSGHFLDKGISCQAEEINNTAGVSFPCFKQEEDRPDIVVEEVADPIITQMVEAAEMIENKSLVLTGHVNERKADVLFAERDDIEPVIARPEKPTDLTGENSVAGCGKMMMDIDDAVAFKAHVLEECQLSGSQPQNPDPSSARPLEKRESTAENELQKLNNENGCDEPEKIEAADSLRHQPVEKFRSIEESVAADRSPSNSRIHKKRMKGKKKALFDGHGDGRNSNDKGDSYESVESCNSAEIFCRGKKIWNKKQLVVERSRVENQIHDSTVSTSVIGKDSSFMIWISNMMKGFPKSIPEKESSLALTHAHSDNEHNDSNKESLIWKKNQDLQHQRMGFQSIFRSLYGLSTKGQHLLSHNAHNEEEERSEDYIKEAYDADATSLAFHKENSNSCGQVILTSQNLNKSTLGNENNESVSGNSADVAIRPNARIHESQMAAPGERRVACNSPPIIGEGKFEMSSSSSLPRKRKSVENIDSVAPSEVKTNLSLGNAGKHLKSLWITRLSMKSSQAVANLDSEDQNINDRLQCGSHILCSQNQVDFTSEQKEQTSDEPHSISKGEMNRCTLYSECTTGFDRIEGHNNQSFANKFNPMLPATRSRRSVMASVFSRRLDALKHIPSNIREISTDQRMICFFCGLRGHHLQDCSEVAESEVVEHLSKIPGLFDGAAEVSCLCIRCFQLNHWAVSCPQSRAQYHPESNCSLVNHFGNGDKQPSNSGLNTKFLVGDSSKPQPPTCIKNHINDPELDDHNLRSKPVHNKNPEQLRTIEDSNERFMASNCMEKKESEIVRFTTIDVRGVFDMIKKLQLSRTDILKWMNSNMSLVKLEGLFLRLRLGKWEKGYGGTGYHVAFVTGTQNARNSISVNVGGIECLTQSQSISNHDFLEEELKVWWHATSKDRSRDIVEADLKAKLKKKRLLGL 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43786340 43790914 + Bma015543.1 Bma02g00807 78057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00807 1058 MobiDBLite consensus disorder prediction 353 369 - -
Bma02g00807 1058 SUPERFAMILY Plus3-like 938 1051 IPR036128 GO:0003677
Bma02g00807 1058 PANTHER UNCHARACTERIZED 56 1057 - -
Bma02g00807 1058 Gene3D - 937 1053 IPR036128 GO:0003677
Bma02g00807 1058 MobiDBLite consensus disorder prediction 281 306 - -
Bma02g00807 1058 SMART c2hcfinal6 771 787 IPR001878 GO:0003676|GO:0008270
Bma02g00807 1058 SMART c2hcfinal6 813 829 IPR001878 GO:0003676|GO:0008270
Bma02g00807 1058 MobiDBLite consensus disorder prediction 267 306 - -
Bma02g00807 1058 ProSiteProfiles Plus3 domain profile. 935 1058 IPR004343 GO:0003677
Bma02g00807 1058 SMART rtf1 935 1035 IPR004343 GO:0003677
Bma02g00807 1058 Coils Coil 281 301 - -
Bma02g00807 1058 Pfam Plus-3 domain 941 1032 IPR004343 GO:0003677
Bma02g00807 1058 ProSiteProfiles Zinc finger CCHC-type profile. 772 787 IPR001878 GO:0003676|GO:0008270
Bma02g00807 1058 Gene3D - 768 839 - -
Bma02g00807 1058 MobiDBLite consensus disorder prediction 327 372 - -
Bma02g00807 1058 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 56 1057 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00807 - - - qsu:112027474 598.971
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004918 3 0 0 1 2 1 1 1 1 1 1 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 5 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00807 Bma_Chr02 FPKM 24.54224 23.089777 3.555283 4.308799 12.274693 11.784587 11.535635 1.541572 1.783393 1.064009