Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00829 ATGGATGCGAAAGTCAAAGCCATGATCAAGCTTATTGAAGAAGATGCAGATTCTTTTGCGAGAAGGGCCGAAATGTACTACAAGAAAAGGCCAGAGCTCATGAAATTGGTCGAGGAAATTTACAGAGCTTACCGCGCATTAGCAGAGAGATACGATCACGCAACTGTGGAGCTTCGTCAAGCTCATCGGACGATGGCAGAAGCATTTCCAAACCAAGTCCCTTATGATCTGATTGATGATTCACCCTCTGAAACTTCTGCTTCTGGACCCGAAGAACCCCATTCTCCTGAAATACCGCATCCAATTCGCTCATTATGTGAACTCAATGACTCGTCAACTAGCACAGATGGATCGGGCTATGGACTTAGCAAAAGGGGTCTAAGACAACTCGACGAAGATGCATTTTCTCAGTTATCGAGTCAGAACCAGAATCTCAAGCTTCGGGCCGAAACATCAGAAACAGAAATTCAAAATATCAAAGTAATGTTGACAAAAATAGAAGCTGAGAAAGAAGCTATTTTCGTCAAGTACCAGCAGGCCTTAGAAAAATTATCCGATCTGGAGAGGAAACTGGACGTTGCTCAGAAAGAAGCTGCAGGGCTTGATCATCGCGCAAGCAAGGCTGAAATCGAGATGAAAATATTGAAGGAAGCTCTTTCTGGAATTGAAGAAGAAAGGGATGCAAGTTTTCTTCAGTATAATCAGTCGTTGGCGAGGATATCTACCCTTGAGAATTTACTCTCTCTTTCTCAGGAAGAGGCTAAAGCACTTGATATGAGAGCTGGTAAAGCAAAAACTGAAACTCAATATCTCAGATTACAGCTTTCGAGTTTAGAGAGCGAAAAGGAAGACAACCTTCGTCAGTATAAACTATGTCTGGAGAAGATATCTCTTATGGAGGCTAAGATTTCTGCTGCTGAGGAAAATGCAGTAGTACTGAATGAACATGTAGTAAGAGCAGAATCTGAAGTAAGTGCATTAAAGGAGACTATCAATGAGCTGAATAAAGAGAAAGAAACAGCATCTCTCCAGTACCAGGAGTGCTTAGACACGATGGCTAAGATGGAGAGCGAAATTGCCCGTTTTCAAAATGATGCGAAACAACTTAATGGCGAACTTCTAACAGTAGCTAAAAAGTTGGACAGTGCAGAAGTAAAATGTTCCCAATTGGAGGAATCAAATCTAGCTCTGCGATTAGAGGCGGACAGTCTGATAAGGAAGATCATGATGAAGGATCAAGAACTTGCTCAAAGGCACGTTGACCTCAAGAAATTCCAGATTCAAATCCAAGATGAGCAGTCGCGGTTTACGCAAGTTGAAACCACTCTTCACGCATTACAAAAATTGCATTCTCAATCTCAAGAGGAGCAGAGAGCTCTTTCATTGGAGCTTAAAAATGGTCTTCAGATGTTGAAGGAGTTGGGATCTCGCAAACTTAGCGTGGAGGAAGAACTTCAAAAGGTCAAGGAGGAAAATAGGAGCCTGAATGAATCAAATTTGTCTTCGAATAGTTCGGTGAAGAATCTGGAGAATGAAATTTTCAGCTTAAAGGTGGTAAAAGACAAACTCGAAGAAGAGGTATTCCGAAAAGCAGAATATAGCAACGCCCTTGAGCAGGAAATTCACCGTTTAAGAGAGGAAATCAAGGGCATGAATGAAAGATACCAGGCCATAATGATGCAGGTTGAATCTGTAAAGGAATTGCAAAATGAGAATGCAAAGCTTAGAGACACCTGCGAGATCGAGCGTAACAAAGGAGAAGTTCTTTACGAGAAGTTGAATTCTATGGACAAAATGTCAAAAGATAATGCAGTTCTCGAGAAGTCTTTAGCGGAAATGAATGGTGAGTTAGAAAAGCTAAGGGCAAAGGAAAAGGACTTTCAGGAGTCATGCCATTTTCTTCAGGGAGAAAAAACCACTCTTGTTGCTGAAAAGGCCACCTTGCTGTTACAGCTGCAGATCATTACTGAAAATATGCAGAAGCTCTTAGAGAAGAACACCTTACTGGAAAATTCCTTATGCGGTGCCAACACCGAGCTTGAAAGTCTGAGGGGTCATTCAACGAGCTTAGAAGATTTCTGCCAGTTGCTGAAGAGTGAAAAATCTACCATTCTCAGTGAAAGAGATGCCTTGGTATCTCAGTTGGAAAGCGTTGAACTGAGGCTGGGAAATCTTGAAAAGAGATTTTCAAATCTCGAAGAGAAGTATACTTCCTTGGAAAACGAAAACGAGGCAACGCTCAATCAAGTGGAAGAATTAAGGTCTTCCCTTGTTTCCCAAAAGGAAGAGCATGCAAGTTACAGGACATTAAACGAGACGAAAGTGTCTGGCTTGGAAACCCATATTCATATCTTGCAAGAAAACAGTAGAATGGGCAAGAGAGAATTTGAAGAAGAACTAGAGAAGGCTGTCAATGCTCAGGTAGAGATCTTCATCCTCCAAAAGTTTGTGGAAGATTTGGAGGGGAAGAATTATTTGATGTTTATCGAATGTCAAAAGCTTAACGAGGCGACCAAATTGTCAAATAAACTGATCTCGGAGTTGGAGCGGGAAAATCTCGAGCAGCAGGTGGAAATAGAGTTCTTAGTGGATGAAATTGAAAACTTAAGAGGTGGGATTCATAGAGTGTTTATGGCTCTTCAACTCAGTCTTGAAAATGGACACAAAGATAAGATCGAGAGAGAGAAACTTCCTCTATTGAATATTTTGGACAAAGTTGAGGAATTAAAAACTTGTTTTCTCAGAAACAAGGATGAGATGCAGCAGCTGCTGGTTGAGAACTCGGTGCTCTTAACTTTGCTTGGGCAACAGAGATTAGAGGGCCAAGAACTTCAGGCAGAGAAATTTTTTCTTGAAAACGAGTTTAAAATCCTGAAAGAAGAGTTCGCTATGAATGAAAAAGACAAACACGATCTGTTAGAGAAGACAAAGCAATTGATGTTTGAAATTACCGAGAAAGAGCAGCACGAGAAATTCTTGGCGGGTGGAATCCAAATCCAAAATCTCGAGATGGAAAATTTGAAACTTGATTACCTTGCGTTACAGGAAGAAAATTCAGAAATGCTTAAAGAAAAGATGTCTGAGCTGGAGAAATTTTTGCAACTCAAAGAGGCAAATCATATTCTTGAAGAGGAACATAGAATAATCAGTGAAGAAGCTGTAGCACTGAGCATATTCTCTTTAGTCTGTGAAAGTTTCACTGCAGATAAAGCTGTAGAAATGAAAGCACTTGATGAAGATCTCAATCGTCACCATGTGGCCAATAGCGTGCTGAAGGAAGAGATCGAGGAGATGGCAGATATATTGGTGGCGAAGGAAAAGGAAATTCTCCAATTGAACAAGTCCGTTAAGAAGTTGATGGAAGAGCTGCATGAAGTCAAAAACTCTAATGATGTTCTAACCCATGAAATCGTTACTGGAAATAATTTTGTCAGACAGAAAGTAGAAGAACTGTCACAAACAGAGCAAGAGCTCAAGGATGTGCAGGAATTAAACGTGAAACTGTACAATGAAGTTGAGGAACTGAAGATGGAATGTAAAGGATCGACTTTGCTTCGAGAAAATCTAGAAATTGAGAATCTTGAACTTTGCATGAATGCCCACGGTTTGAATGATGAAATCACTTGGCTCAATGATATGAATGAAAATTTGAAATCTGAGATTGGCGTTTTGAGTAAGGAAGTCAAAGAATGCAGGATTAGAGAGGAAAACCTCAGTTCAGAGCTTCAGGAGAGAAGAGACGGGTTCGAACTATGGGATGCTGAAGCCGCTTCGTTCTATTTTGATCTTCAGATTTCGTCCATTCGTGAGGTCTTCCTCGAAAATAAGCTGCACGAACTTACTCAAGTTTGTGAGAAGCTTGGAGGTGACAGTGCGGCAAAGGACGTGGAGATTCAAAGTCTACGAGAAAGCATTATGTTCATGGAAAGTGAAATGGGAGGACTGAAGGCCAAGTTTTCCACATACTTGCCTGATACGACTTCTTCGAAAGAGAATGTAGAAGTACTCGAGCACTATGTTCTTCCTCAAACTAAGCATTTCTCTGGTGGAATTCAAGAAGAAAAGGTAATAATCTTATCTCAGCCTAAACGTCTTTTGTTCTACAAGTCTTCCAGTCATATTTCTAATGCTACATTTCCTTGCAGGATGATGAAAACGCAGCTCTGCGCAACAAGATGGGGGCTAGGACTAAAGAATTTCAAGAGCTAG 4209 40.82 MDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEIYRAYRALAERYDHATVELRQAHRTMAEAFPNQVPYDLIDDSPSETSASGPEEPHSPEIPHPIRSLCELNDSSTSTDGSGYGLSKRGLRQLDEDAFSQLSSQNQNLKLRAETSETEIQNIKVMLTKIEAEKEAIFVKYQQALEKLSDLERKLDVAQKEAAGLDHRASKAEIEMKILKEALSGIEEERDASFLQYNQSLARISTLENLLSLSQEEAKALDMRAGKAKTETQYLRLQLSSLESEKEDNLRQYKLCLEKISLMEAKISAAEENAVVLNEHVVRAESEVSALKETINELNKEKETASLQYQECLDTMAKMESEIARFQNDAKQLNGELLTVAKKLDSAEVKCSQLEESNLALRLEADSLIRKIMMKDQELAQRHVDLKKFQIQIQDEQSRFTQVETTLHALQKLHSQSQEEQRALSLELKNGLQMLKELGSRKLSVEEELQKVKEENRSLNESNLSSNSSVKNLENEIFSLKVVKDKLEEEVFRKAEYSNALEQEIHRLREEIKGMNERYQAIMMQVESVKELQNENAKLRDTCEIERNKGEVLYEKLNSMDKMSKDNAVLEKSLAEMNGELEKLRAKEKDFQESCHFLQGEKTTLVAEKATLLLQLQIITENMQKLLEKNTLLENSLCGANTELESLRGHSTSLEDFCQLLKSEKSTILSERDALVSQLESVELRLGNLEKRFSNLEEKYTSLENENEATLNQVEELRSSLVSQKEEHASYRTLNETKVSGLETHIHILQENSRMGKREFEEELEKAVNAQVEIFILQKFVEDLEGKNYLMFIECQKLNEATKLSNKLISELERENLEQQVEIEFLVDEIENLRGGIHRVFMALQLSLENGHKDKIEREKLPLLNILDKVEELKTCFLRNKDEMQQLLVENSVLLTLLGQQRLEGQELQAEKFFLENEFKILKEEFAMNEKDKHDLLEKTKQLMFEITEKEQHEKFLAGGIQIQNLEMENLKLDYLALQEENSEMLKEKMSELEKFLQLKEANHILEEEHRIISEEAVALSIFSLVCESFTADKAVEMKALDEDLNRHHVANSVLKEEIEEMADILVAKEKEILQLNKSVKKLMEELHEVKNSNDVLTHEIVTGNNFVRQKVEELSQTEQELKDVQELNVKLYNEVEELKMECKGSTLLRENLEIENLELCMNAHGLNDEITWLNDMNENLKSEIGVLSKEVKECRIREENLSSELQERRDGFELWDAEAASFYFDLQISSIREVFLENKLHELTQVCEKLGGDSAAKDVEIQSLRESIMFMESEMGGLKAKFSTYLPDTTSSKENVEVLEHYVLPQTKHFSGGIQEEKVIILSQPKRLLFYKSSSHISNATFPCRMMKTQLCATRWGLGLKNFKS 1402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45107763 45111971 - Bma015578.1 Bma02g00829 78079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00829 1402 Coils Coil 534 585 - -
Bma02g00829 1402 Coils Coil 135 225 - -
Bma02g00829 1402 Coils Coil 1088 1136 - -
Bma02g00829 1402 PANTHER PROTEIN NETWORKED 4A 132 1357 - -
Bma02g00829 1402 Coils Coil 471 498 - -
Bma02g00829 1402 MobiDBLite consensus disorder prediction 71 123 - -
Bma02g00829 1402 Coils Coil 1141 1192 - -
Bma02g00829 1402 Coils Coil 831 865 - -
Bma02g00829 1402 Gene3D - 587 774 - -
Bma02g00829 1402 PANTHER PROTEIN NETWORKED 4A 1 130 - -
Bma02g00829 1402 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 1 58 IPR011684 GO:0003779
Bma02g00829 1402 Coils Coil 645 672 - -
Bma02g00829 1402 Coils Coil 708 763 - -
Bma02g00829 1402 Coils Coil 596 630 - -
Bma02g00829 1402 Coils Coil 1214 1234 - -
Bma02g00829 1402 Coils Coil 380 407 - -
Bma02g00829 1402 Coils Coil 506 526 - -
Bma02g00829 1402 Pfam KIP1-like protein 1 52 IPR011684 GO:0003779
Bma02g00829 1402 Coils Coil 303 372 - -
Bma02g00829 1402 MobiDBLite consensus disorder prediction 106 120 - -
Bma02g00829 1402 Coils Coil 941 961 - -
Bma02g00829 1402 SUPERFAMILY Tropomyosin 137 382 - -
Bma02g00829 1402 Coils Coil 997 1032 - -
Bma02g00829 1402 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 130 - -
Bma02g00829 1402 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 132 1357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00829 - - - qsu:111998448 1384.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00829 Bma-Chr2:45107763 Bma10g01044 Bma-Chr10:28600344 2.57E-16 dispersed
Bma01g02583 Bma-Chr1:83461938 Bma02g00829 Bma-Chr2:45107763 1.55E-29 transposed
Bma03g01201 Bma-Chr3:18485948 Bma02g00829 Bma-Chr2:45107763 4.89E-25 transposed
Bma02g00829 Bma-Chr2:45107763 Bma09g00624 Bma-Chr9:43583258 1.28E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00829 Bma_Chr02 FPKM 101.820023 113.721771 9.356544 9.30651 0.0 0.0 0.315423 5.056844 4.703954 4.369095