Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00835 AGAACGTTAGTAATGGAGCACTTGCGAATGATGAAGTCGACTCTGATCTTCGCTCTCCTGGCAGCTATGCTCTGGGCAAGAGCCGAGTCACAGTCATGTACCAACGTGATAATCACTCTGTCTCCCTGCTTAAACTACATTACAGGAAACTCTTCAACCCCATCTTCAGGATGCTGCTCACAGCTTGCAAGCGTTGTCCGTTCACAGCCTCAGTGCTTATGCCAGGTCCTCAACGGTGGAGGTTCCTCGCTCGGGCTCAATATCAACCAAGCTCAGGCTCTGGCTCTACCTTCTGCTTGCAATGTTCAAACTCCGTCAATTAGTAGCTGCAATGGTGAGCATTTCTCAATATTTTTTTTCTCCCATGCATGA 372 48.39 RTLVMEHLRMMKSTLIFALLAAMLWARAESQSCTNVIITLSPCLNYITGNSSTPSSGCCSQLASVVRSQPQCLCQVLNGGGSSLGLNINQAQALALPSACNVQTPSISSCNGEHFSIFFFSHA 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45255096 45255467 + Bma015585.1 Bma02g00835 78085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00835 123 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 15 113 IPR043325 -
Bma02g00835 123 PRINTS Plant phospholipid transfer protein signature 32 48 IPR000528 GO:0006869|GO:0008289
Bma02g00835 123 PRINTS Plant phospholipid transfer protein signature 87 104 IPR000528 GO:0006869|GO:0008289
Bma02g00835 123 PRINTS Plant phospholipid transfer protein signature 53 67 IPR000528 GO:0006869|GO:0008289
Bma02g00835 123 Gene3D - 30 107 IPR036312 -
Bma02g00835 123 PANTHER - 15 113 - -
Bma02g00835 123 Pfam Probable lipid transfer 21 110 IPR016140 -
Bma02g00835 123 CDD AAI_LTSS 40 102 - -
Bma02g00835 123 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 31 111 IPR036312 -
Bma02g00835 123 SMART aai_6 33 110 IPR016140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00835 - - - ming:122061202 154.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00835 Bma-Chr2:45255096 Bma03g01407 Bma-Chr3:35965631 5.58E-13 dispersed
Bma06g01562 Bma-Chr6:51913140 Bma02g00835 Bma-Chr2:45255096 2.02E-08 dispersed
Bma14g00025 Bma-Chr14:332866 Bma02g00835 Bma-Chr2:45255096 6.72E-10 dispersed
Bma14g00028 Bma-Chr14:376857 Bma02g00835 Bma-Chr2:45255096 6.72E-10 dispersed
Bma15g00438 Bma-Chr15:4744440 Bma02g00835 Bma-Chr2:45255096 1.35E-09 dispersed
Bma02g00834 Bma-Chr2:45254116 Bma02g00835 Bma-Chr2:45255096 1.07E-10 tandem
Bma12g00377 Bma-Chr12:7222552 Bma02g00835 Bma-Chr2:45255096 1.56E-17 transposed
Bma12g00394 Bma-Chr12:8272948 Bma02g00835 Bma-Chr2:45255096 5.15E-15 transposed
Bma02g00835 Bma-Chr2:45255096 Bma06g01561 Bma-Chr6:51898334 5.66E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00835 Bma_Chr02 FPKM 0.0 0.0 0.719632 0.0 0.0 0.890762 1.01862 0.0 0.357381 0.0