Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00845 ATGCCCTTCCTCTCTCCAAACGCACTCGCCTCTCTGCTCGAATCGGCCTTGTTAACTCACTCTTCTCTTCTCGGCCGTGCTGTCCATGGCCAAATCCTGAAGACTCAACAACATCCACTCCCTTCCTTCCTCTACAATCACCTCGTCAACATGTACTCCAAATTCGACCTCCATAACTCGGCGCAACTCGTCCTCTCACATGCTCCATCCCGCTCCGTCGTTACATGGACAGCTCTCATCGCCGGCGCCGTCCAAAATGGTCGATTTATCCCAGCTTTGCTTCACTTCTCCAACATGCGGCGCGAGAGCATTGAGCCCAATGATTTTACCTTCCCTTGTGCGTTTAAGGCGGCAGCCTCGCTTCGAATGCCGGTGATTGGGAAGCAAGTTCATGCGCTTTCACTTAAAGCTGGACAGATATTCGATGCCTTTGTTGGGTGCAGCGCCTTCGACATGTACAGCAAAACGGGTCTCCAAGATGATGCGTCAAAGATGTTCGATGAAATGCCTGATAGAAACCTCGCAACATGGAACGCTTACATTACAAATTCGGTACTCAATGGGCGTCCAAAGGACGCTGTTCTTGCATTTATCAAATATCTTCGTTTGGGTGGAGACCCAGATTCGATAACATTCTGTGCTTTTCTCAATGCGTGTTCAGATACTCAAGACTTGGAGCTTGGGGGTCAATTACATGGATTTATACTTCGAAGTAGGTTCAGTTGCAGTGTCTCTGTTTCAAACGGGCTCATAGATTTTTACGGAAAGTGTCGGCAGGTTGGAAGATCGAAGATTGTTTTCGATAGAATTAGTGAGAGGAACGAAGTTTCTTGGAGCTCAGTGGTGGCTGCTTATGTGCAAAACGAGGAGGAAGAGAAGGCCTGTGCCATATTCCTACAGGCTCGAAAAGAACATATTAAACCAACCGATTTCATAATCTCTAGCATGCTTACTGCTTGTGCTGGCCTGGCAGGGATTGAATTGGGAAGATCAGTCCACGCCCTCTCTGTCAAAGCTTGTGTTGACAGAAACATCTTTGTCGGGAGTGCACTTGTCGACATGTATGGAAAATGTGGAAGTATAGATGATTCCGAAAAGGCCTTCTATGAGATGCCTGAGAGAAACTTGGTTTCCTGGAATGCGATGATTGGTGGGTATGCACGACAAGGACATTCAGACAAGGCGTTAGCATTGTTCGAGGAAATGAAATCGAAAAACGAGGTACCAAGCTGTGCCACTCTGGTTTGTGTTCTGTCGTCTTGTAGCAGAGCAGGAGCAGTGGAAATGGGGATGGAGATATTCGAGTCGATGAGAGAAAGCTATGGTATTGAAGCAAGGGCGGAGCATTATGCTTGTGTGGTTGACTTACTCGGCCGAGCTGGGTTGGTCGATCGTGCTTACGAGTTTATACAGAGAATGCCAATTCGTCCTACGATATCGGTTTGGGGTGCTCTCTTAGGGGCCTGCAGAAAATATGGGAAGCCAGAATTAGGAAAGCTGGCCGCTGAGAACCTCTTTGACCTCGATCCAAAAGACTCTGGCAATCATGTTGTGCTTTCCAATATGTTTGCAGCCGCTGGCAGGTGGGAAGAAGCTACAATGGTAAGAAAGGAGATGAAAGACGTTGGAATCAAGAAGGGAGCTGGATTCAGTTGGATTAATATCCACAACTCAGTTCATGTCTTCCAAGCAAAAGACACTTGCCATGAAAGAAACTCAGAGATTCAGGCAATGCTGGGTGAGTTAAGAAGAGAGATGAAGGAATCGGGCTACAATCCCGACACGAATTTCGCTCTTTTTGACGTGGAAGAAGAAGAGAAAATGTCGGAAGTATGGTACCACAGCGAGAAAATTGCACTGGCTTTTGGTCTCATTTCCATCCCTCCTGGAATTCCAATAAGGATCACCAAGAACCTGACGATTTGCGGAGATTGCCATAGTGCGATCAAGTTCATTTCAGGCATTAGGGGTCGAGAAATCATCGTGAGGGATAATAATAGATTTCATCTCTTCAGAAACGGCCATTGTTCCTGCGGAGATTATTGGTGA 2049 46.95 MPFLSPNALASLLESALLTHSSLLGRAVHGQILKTQQHPLPSFLYNHLVNMYSKFDLHNSAQLVLSHAPSRSVVTWTALIAGAVQNGRFIPALLHFSNMRRESIEPNDFTFPCAFKAAASLRMPVIGKQVHALSLKAGQIFDAFVGCSAFDMYSKTGLQDDASKMFDEMPDRNLATWNAYITNSVLNGRPKDAVLAFIKYLRLGGDPDSITFCAFLNACSDTQDLELGGQLHGFILRSRFSCSVSVSNGLIDFYGKCRQVGRSKIVFDRISERNEVSWSSVVAAYVQNEEEEKACAIFLQARKEHIKPTDFIISSMLTACAGLAGIELGRSVHALSVKACVDRNIFVGSALVDMYGKCGSIDDSEKAFYEMPERNLVSWNAMIGGYARQGHSDKALALFEEMKSKNEVPSCATLVCVLSSCSRAGAVEMGMEIFESMRESYGIEARAEHYACVVDLLGRAGLVDRAYEFIQRMPIRPTISVWGALLGACRKYGKPELGKLAAENLFDLDPKDSGNHVVLSNMFAAAGRWEEATMVRKEMKDVGIKKGAGFSWINIHNSVHVFQAKDTCHERNSEIQAMLGELRREMKESGYNPDTNFALFDVEEEEKMSEVWYHSEKIALAFGLISIPPGIPIRITKNLTICGDCHSAIKFISGIRGREIIVRDNNRFHLFRNGHCSCGDYW 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45579586 45581722 + Bma015597.1 Bma02g00845 78095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00845 682 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Bma02g00845 682 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Bma02g00845 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Bma02g00845 682 Pfam E motif 494 554 IPR046848 -
Bma02g00845 682 PANTHER OS07G0578800 PROTEIN-RELATED 3 671 IPR045215 GO:0003723|GO:0009451
Bma02g00845 682 Pfam DYW family of nucleic acid deaminases 590 682 IPR032867 GO:0008270
Bma02g00845 682 Pfam PPR repeat 450 473 IPR002885 -
Bma02g00845 682 Pfam PPR repeat 276 303 IPR002885 -
Bma02g00845 682 PANTHER OS11G0583200 PROTEIN 3 671 - -
Bma02g00845 682 Gene3D Tetratricopeptide repeat domain 4 124 IPR011990 GO:0005515
Bma02g00845 682 Gene3D Tetratricopeptide repeat domain 230 323 IPR011990 GO:0005515
Bma02g00845 682 Gene3D Tetratricopeptide repeat domain 128 227 IPR011990 GO:0005515
Bma02g00845 682 Pfam PPR repeat family 375 422 IPR002885 -
Bma02g00845 682 Pfam PPR repeat family 72 117 IPR002885 -
Bma02g00845 682 Gene3D Tetratricopeptide repeat domain 324 440 IPR011990 GO:0005515
Bma02g00845 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Bma02g00845 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00845 - - - zju:107423179 1052.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00845 Bma-Chr2:45579586 Bma08g00678 Bma-Chr8:41843900 2.19E-07 dispersed
Bma02g00845 Bma-Chr2:45579586 Bma02g01043 Bma-Chr2:51951043 7.54E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g511 . . . . . Bpe14g01189 . . . . . Cma14g01709 . Car14g01544 . . . Bhi01g00809 . . . . . Lcy11g1547 . . . . . . . . Cone10ag0051 . . . . . Cme06g00608 Blo02g00537 . . Bda13g00119 . . Bma02g00845 . . . Cmo14g01753 . . . . . . . . . . . . . . . . . . . . . Csa03g01327 Chy06g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010596 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00845 Bma_Chr02 FPKM 16.183983 20.188576 2.260146 4.114774 17.989351 17.91773 16.427271 41.719501 43.023476 34.098816