Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00859 ATGGCTCAGCTGGACAGCCAGCAACCCTCCCTCCACCATCTCCGTCGCGCCAAGTCTTTGATTTCTGCCCTCAACCTCGTCTCCCGCAATCTTCCTCTGCCTCCTCAACTTTTTGACACCGTTTCCTCCATCTATTCCGCTGCTCCAGCCGAAAACGACGACCCCTGCGATGCTATGGATACTCATCAGAGTGACCCTCAAGAAGATTTATTGAGTGAAATTGAGGATGCCCTAACCAGTCAGCGATCAGAATGCACGTCAAGTTTTGGATTGACAGAATCAAGAGAGAATCGGTATCAGAGCAACATACACCATCGGCTGACTGAACTTGAAGAATTACCATCCAATAGAGGAGAGAACTTGCAGACAAAATGCTTGATTGAGCTTTATGGCTTAAAGCTGGGAGAATTGCAAAGAAAGGTTCGATCAGATTTGAGCTTGGAGTACTTGCTACATAAGACTTGTGCATATCCCGATAAGCAATTATTTGATTGGGGGATGATGCGGTTGCATCGTCTTCCATATGGTGTAGGAGATTCTTTTGCCACCGAAGCTGATGATCAGTTAAGGAAGAAACGAGATGCTGAGAGACTGTCAAGGTTAAAAGAGGAGGAGAAGAACCACGTCGAGACTAGGAAAAGAAAATTTTTTACAGAAATACTCAATGCAGTTCGTGAGTTCCAGTTGCAAAATCAAGCTACTTTGAAACGCCGAAAACAAAGGAATGATGGAATCCAGGCTTGGCATGGAAGGCAAAGACAGCGAGCAACTCGGGCAGAGAAACTGAGGTTCCAAGCACTAAAGGCAGATGACCAAGAAGCGTACATGAGACTGGTTAAGGAGAGCAAGAATGAACGATTAACTATTCTTCTTGAAGAAACTAATAAGTTGCTCGTTAATTTGGGAGCCGCTGTTCAACGGCAAAAGGATTCTAAACTTTCAGATGGCATTGAAACCTTGGATGACTCAGAAACTGATTTGTCCGAGTTGGATACTTCAAAGAATGGAACCCCTCCAGATTTTCTTCCTGAGGAAGATGTGGATGCCAATGATTCAGATCACAATGACGACGCAGATGATCTACTTGAAGGACAGAGGCAGTATAACTCCGCTATTCATGCCATCCAAGAAAAGGTCACTGAGCAACCATCCATGTTGCAAGGAGGAGAATTAAGATCCTACCAAATAGAGGGGCTGCAATGGATGCTTTCTTTATTTAACAACAACTTAAATGGAATTTTGGCTGATGAGATGGGATTGGGAAAGACAATCCAAACCATTTCATTGATTGCTTATCTGATGGAATTCAAGGATGTGACCGGGCCCCACTTGATAGTGGCTCCAAAGGCTGTGCTGCCAAATTGGATGATTGAATTCTCAGCATGGGCCCCTAGTGTTGCAGCTGTTCTTTATGATGGGCGTCAAGATGAAAGAAAGGCAATCAAAGAAGAATTATTAGGAGATAAGAAATTTAATGTGTTGGTTACACATTATGATCTAATCATGAGAGATAAATCATTTTTGAAGAAAATCCACTGGTACTACATGATTGTTGACGAAGGACATCGGTTAAAAAATCGAGAATGTGCTCTATCACAGACACTTTCAGGTTATCAAATAAAGCGCAGGCTTCTTTTGACTGGTACCCCCATACAGAACAGTTTGCAGGAACTATGGTCCCTACTTAATTTTCTTCTTCCGCATATTTTTAATTCCGTTCAGAATTTCCAGGAGTGGTTTAATGCCCCCTTTGTTGGTCGTGGGGATGTGTCTCTGACAGATGAAGAAGAGCTATTAATCATTCGACGTTTGCATCACGTTATTAGGCCATTTATATTGAGGCGAAAAAAAGATGAAGTGGAGAAATATCTTCCCGGGAAGTCACAGGTCATTCTAAAATGTGATATGTCAGCATGGCAGAAAGTATATTATCAACAAGTTACAGATGATGGCAGAGTTGATACTGGTTCTGGGAAGTCAAAGACTCTGCAGAATCTAACAATGCAGCTTAGAAAGTGTTGTAACCACCCATATCTTTTCATAACTGGAGATTATAACATCTGGCGAAAGGAAGAAATCATCAGAGCATCTGGGAAATTTGAACTGCTTGATCGTTTACTCCCGAAGCTACGCAGAGCCGGACACAGAGTTTTGCTTTTCTCACAAATGACACGTCTGATGGACATTCTTGAAATATATCTGCAGCTACACGATTTCAAATATCTTAGACTGGATGGTTCGACAAAAACCGAGGAAAGAGGTTCTCTGCTGAAGCAATTCAATGCTCCCGACTCCCCTTTCTTCATGTTTCTCCTGAGTACTCGTGCTGGGGGGCTTGGTTTGAACTTACAGACAGCAGATACCGTTATAATTTTTGACAGCGATTGGAATCCTCAAATGGACCAACAAGCAGAGGATCGGGCGCATAGAATAGGACAAAAGAAAGAAGTTAGGGTGTTTGTCTTGGTCAGTGTTGGATCAATTGAGGAGGTAATATTGGAACGTGCTAAAGAAAAGATGGGCATTGACGCCAAGGTCATCCAGGCAGGACTTTTCAATACGACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATCATGCGTCGAGGAACAAGCTCGCTTGGAACAGATGTGCCTAGCGAGAGAGAAATTAACCGCCTTGCTGCAAGGTCAGAGGAGGAATTTTGGCTTTTCGAGAAGATGGACGAGGAGAGAAGACAGAAAGAGAATTACCGATCCCGGCTTATGGAGGAACACGAGGTGCCCGAGTGGGTATACTCTGCACCTGATAACAAGGAAGAAAAGAACAGAGGTTTCCACAGCATTACCGGAAAACGGCGAAGAAAGGAGGTGGTTTATGCAGATTCACTCAGTGACTTGCAGTGGATGAGGGCAGTAGAAAATGGAGAAGATATATACAGCCTTTCTGTTAAAGGGAAGAGAAGAGATCTGACATCTGATGGCACAACAACAACAATTATAAGCAACTTGAGGGTCGAAAGTAAAGAAATAGAATTGCACGAAACTGCGACAATTGTTAGTGAAGGCACTAGTGAGGACACCACCGGGGTAGAATCAACCCCGAAGAGGCACAAGTTCGAAGAAGCCATGATTGGAATCCATGAATACGATTCAACCTCGAGAAACGAGTGGCATAACCATATGTTCACATGGAATACTCATAAGAAAAAGAGATCTAGCTACGTAAATCAAGGCGCATCTACTGATTCTAGAGGACATAATTCGTATGGAAGAGGAAATGGGTGGTCT 3276 43.28 MAQLDSQQPSLHHLRRAKSLISALNLVSRNLPLPPQLFDTVSSIYSAAPAENDDPCDAMDTHQSDPQEDLLSEIEDALTSQRSECTSSFGLTESRENRYQSNIHHRLTELEELPSNRGENLQTKCLIELYGLKLGELQRKVRSDLSLEYLLHKTCAYPDKQLFDWGMMRLHRLPYGVGDSFATEADDQLRKKRDAERLSRLKEEEKNHVETRKRKFFTEILNAVREFQLQNQATLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTILLEETNKLLVNLGAAVQRQKDSKLSDGIETLDDSETDLSELDTSKNGTPPDFLPEEDVDANDSDHNDDADDLLEGQRQYNSAIHAIQEKVTEQPSMLQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEFKDVTGPHLIVAPKAVLPNWMIEFSAWAPSVAAVLYDGRQDERKAIKEELLGDKKFNVLVTHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRECALSQTLSGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFVGRGDVSLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDDGRVDTGSGKSKTLQNLTMQLRKCCNHPYLFITGDYNIWRKEEIIRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLQLHDFKYLRLDGSTKTEERGSLLKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKEKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSEEEFWLFEKMDEERRQKENYRSRLMEEHEVPEWVYSAPDNKEEKNRGFHSITGKRRRKEVVYADSLSDLQWMRAVENGEDIYSLSVKGKRRDLTSDGTTTTIISNLRVESKEIELHETATIVSEGTSEDTTGVESTPKRHKFEEAMIGIHEYDSTSRNEWHNHMFTWNTHKKKRSSYVNQGASTDSRGHNSYGRGNGWS 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46252504 46258925 - Bma030910 Bma02g00859 78109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00859 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 866 IPR027417 -
Bma02g00859 1092 Pfam Helicase conserved C-terminal domain 699 812 IPR001650 -
Bma02g00859 1092 Gene3D - 382 624 IPR038718 -
Bma02g00859 1092 PANTHER SNF2/RAD54 HELICASE FAMILY 12 1040 - -
Bma02g00859 1092 PANTHER ATP-DEPENDENT HELICASE BRM 12 1040 - -
Bma02g00859 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 615 IPR027417 -
Bma02g00859 1092 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 568 IPR014001 -
Bma02g00859 1092 Gene3D - 625 843 IPR027417 -
Bma02g00859 1092 Coils Coil 903 923 - -
Bma02g00859 1092 SMART helicmild6 728 812 IPR001650 -
Bma02g00859 1092 SMART SnAC_2 905 965 IPR029295 GO:0042393
Bma02g00859 1092 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 702 869 IPR001650 -
Bma02g00859 1092 CDD SF2_C_SNF 690 823 - -
Bma02g00859 1092 Pfam Snf2-ATP coupling, chromatin remodelling complex 905 965 IPR029295 GO:0042393
Bma02g00859 1092 Pfam SNF2-related domain 394 679 IPR000330 GO:0005524|GO:0140658
Bma02g00859 1092 MobiDBLite consensus disorder prediction 344 358 - -
Bma02g00859 1092 MobiDBLite consensus disorder prediction 310 360 - -
Bma02g00859 1092 MobiDBLite consensus disorder prediction 1064 1092 - -
Bma02g00859 1092 SMART ultradead3 387 579 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00859 - - - csv:101222943 1725.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00859 Bma-Chr2:46252504 Bma02g00875 Bma-Chr2:46932066 1.37E-171 dispersed
Bma03g00992 Bma-Chr3:10721657 Bma02g00859 Bma-Chr2:46252504 4.64E-59 dispersed
Bma02g00859 Bma-Chr2:46252504 Bma07g00277 Bma-Chr7:3445040 4.52E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56897 PF00176 SNF2_N 6.60E-68 CL0023 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00859 Bma_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0