Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00880 ATGGGTGGGTGCTTTCCTTGTTTGAGATCATCCGTGGAAGAGGGTAGTGGTGATAAGGAAGCAACTAAGAAGGATTCGTTCAAGGATGGCTCTGCTGCTCAGATTCACCACATCAACAGGGTTGGCTCAGAAAAATCTAAATCACGAAGCAGTACTGACGCCAAGAAGGAATCAACTGTTCCAAAAGACGCTCCGACGGCTCATATTGCAGCTCAAACCTTCACATTTCGAGAACTTGCAGCTGCAACAAAGAATTTTAAACCCGAATGCTTACTAGGCGAAGGAGGATTTGGCCGAGTTTACAAAGGTCGTTTAGAGAGCACAGGACAGGCAATTGCTGTGAAACAGCTTGATCGAAATGGCCTCCAAGGAAATCGGGAATTTCTAGTGGAGGTTCTAATGCTGAGTCTTCTACACCATCCAAATCTTGTGAACTTGATTGGCTATTGCGCCGATGGGGATCAACGACTTCTTGTTTACGAGTTCATGCCATTGGGATCTTTGGAGGATCATTTACACGATCTTCCGCAGGATAGGGAGCCCCTGGATTGGAGCACGAGAATGAAGATTGCAGCCGGTGCAGCGAAGGGATTGGAGTATTTACACGATCAAGCAAACCCTCCAGTTATATACCGAGACTTGAAGTCATCGAACATCCTTCTAGAAGAAGGTTATCACCCGAAATTGTCAGATTTTGGTCTTGCAAAATTGGGTCCCGTCGGGGATAAAACTCATGTCTCTACACGGGTGATGGGAACGTATGGTTATTGTGCTCCAGAGTATGCGATGACTGGCCAGCTCACCCTAAAGTCAGATGTGTATAGCTTTGGAGTTGTCTTTCTCGAACTTATCACTGGCCGGAAGGCTATTGATAATACTCGAGCTGCGGGAGAGCATAATCTTGTTGCCTGGGCTCGTCCTCTTTTCAAGGATAGACGAAAGTTTCCAAAAATGGCAGACCCGCTATTACAAGGGCGATACCCAATGAGAGGACTTTATCAAGCCCTTGCTGTTGCAGCAATGTGTTTGCAGGAACAAGCAGCCACAAGGCCTCTGATAGGGGATGTTGTCACTGCTCTCACTTATTTGGCCTCTCAAACCTACGATCCCAATGCGGTTGGTTCTCAAAGCAATCGCGTTGGTTCATCGACTCCGAGGAACAGAGACGACCGGAGAGGCGGGCCAGATGGACTGGATAGCCCGAACGACCGAGGCTGCCACATGGGTTCTCCTTCAACCCATAAAAACTCTCCTGATTTTAGGAAGAGGGAGCATGCAAGGGAGCTGAGCTCTGGAGGAGAGCTTAGCAAAATGGAAACCAGTGGAGGGTCTGGCAGAAAATGGGGGTTGGACGGGTCGGAATCTCACGAATCGTATCATTACAGCCCTGTAAATACCGGGAGAGTGCGAGAAACTACGAGGAATCGCGATCTGGATCGAGAACGGGCAGTGGCAGAGGCAAAAGTATGGGGCGAAAATTGGAGGGAGAAGAAGAGAGCAAATTCAGTGGGTAGCTTCGATAGTTCCAACGAGTGA 1536 48.5 MGGCFPCLRSSVEEGSGDKEATKKDSFKDGSAAQIHHINRVGSEKSKSRSSTDAKKESTVPKDAPTAHIAAQTFTFRELAAATKNFKPECLLGEGGFGRVYKGRLESTGQAIAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPQDREPLDWSTRMKIAAGAAKGLEYLHDQANPPVIYRDLKSSNILLEEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAAGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAVGSQSNRVGSSTPRNRDDRRGGPDGLDSPNDRGCHMGSPSTHKNSPDFRKREHARELSSGGELSKMETSGGSGRKWGLDGSESHESYHYSPVNTGRVRETTRNRDLDRERAVAEAKVWGENWREKKRANSVGSFDSSNE 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47096760 47099672 - Bma015651.1 Bma02g00880 78130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00880 511 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00880 511 CDD STKc_IRAK 92 361 - -
Bma02g00880 511 MobiDBLite consensus disorder prediction 384 398 - -
Bma02g00880 511 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00880 511 MobiDBLite consensus disorder prediction 370 481 - -
Bma02g00880 511 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Bma02g00880 511 Gene3D Phosphorylase Kinase; domain 1 42 162 - -
Bma02g00880 511 MobiDBLite consensus disorder prediction 13 31 - -
Bma02g00880 511 MobiDBLite consensus disorder prediction 40 62 - -
Bma02g00880 511 Pfam Protein kinase domain 91 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00880 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Bma02g00880 511 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 504 - -
Bma02g00880 511 MobiDBLite consensus disorder prediction 416 432 - -
Bma02g00880 511 Gene3D Transferase(Phosphotransferase) domain 1 163 380 - -
Bma02g00880 511 MobiDBLite consensus disorder prediction 1 64 - -
Bma02g00880 511 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Bma02g00880 511 PANTHER OS07G0668900 PROTEIN 1 504 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00609 Bma-Chr2:14042659 Bma02g00880 Bma-Chr2:47096760 1.43E-177 dispersed
Bma02g00880 Bma-Chr2:47096760 Bma04g01114 Bma-Chr4:26259746 0 dispersed
Bma04g00826 Bma-Chr4:10303699 Bma02g00880 Bma-Chr2:47096760 2.56E-54 dispersed
Bma07g01515 Bma-Chr7:50773043 Bma02g00880 Bma-Chr2:47096760 4.37E-26 dispersed
Bma02g00880 Bma-Chr2:47096760 Bma10g00543 Bma-Chr10:6598170 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66360 PF00069 Pkinase 6.80E-45 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00880 - - zju:107426910 886.715