Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00906 AAGCCAAAATTCGCTTTCAGTTGGTTCAATGACAAAGATAAGTTCCAAGCCGGCCAAATAGCGACTGTAAGGATCAAAGTTCTGGAAAATTTTGACAAGATAGATAGAGATAAGCTGATCCTTACTCTAACTGTCAATGGAAAAACGGGGAATAGCTCATTCATTTCTGGGGTTCTTTCAGATTTTGGGGGTGATCCAAATAATTGGAGTATTTCCTTCACTACAATTTCGGTTGGTTTGTTTAATGTGATGATTAACGAAGATCATCTTCAAGTCTTTGATTCTTCGCTCCATTTTCTTGTCGTACCAGGGAAAATTTACCCATCCGCCAGTATAGCTTCATGGACAAATCTGGTGAATGAGTTTGACGCAGGAACAAAAGCTTCGATTTCAATCCTTCCGAAAGATGCATTTGGGAATAATATCTCTTCTGTCGATGAACCCAATGCATTTAATTTTACTCTGTTTACTTATCTTGCAAATAACTCCATTGCAAGTCTTTCTAACACAACTAACATGGGATGGAATGAGTTTGGTTATATTAATATTGAATTTGTTGTCGTTCTGGCTGGAAATTTCTTGTTGCATGTAGAATGTGGAAACCAAACCTTGAGAGAGGCTCCTTTATCGTTCGAGGTGAATCCAGGTGGACCATTAGAGGTCTCCAATTGTGTGGTTCACTGGGACTTTGAACCGTATGCATGGCAGTTATTCTCTAAGATGGAAATATTTGTACTCCAACGAGATAAATTTGGCAACTTTGTTCCTGGACTCTATGCATTCGATGCTGAAATTGTCAACAGAGAAAAAAATTTATCAATACCTGTATCTGATTTACATTTTCGAGAAGTTGAGAGTGGAATTCAGCTGTTTTCTTTCACCAATTTGGAAGCAGGAAATTTCTTACTAACAATATCAGATGTTGAGCACAATATAATTATATCCAACATGCCTTATGCTTATACAGTCTACATAGGTTATTGTGATGGATTACAAAGTGTTGTTAATGGAACTGGCATCAATAACTCAGTTGCTGGGGAGTTATCAGAGTTCTATGTTTATTTGAATGATGTTTATCAATATCCCACCCCAATTGAACTACAATGGCTTCGAATACAGATTGTAAGGGAGATCGATGTTTATGCTTTGTTACCCAGCATACATCCAATCAATGGTACACTCATGCTTTTGAAATTGTTCTCGCTTAGATATACTTTAGTAACTAATGGTGCAATGTTTTTGATCCAGTCTGCATCAGACTCAAAAATTCTGGCCAATGCTTTTGATGTGAGTTATACACCTGACAAGAGTGGGGTTTATAGTATTTTTGTGTTTTGTGGAAATATTCTTTTGAATGGCGGTCATTCAATTAAAAAGGAAGTAGCATCAGGTGGAGTTAACATATCACTCTCGGGAGTTGTGAAATTTTCTTCCAAGGTTCCTAAGCTGACTGAGAATGAAATTGTAGTGCAGCTTATGGATTCATTTTGGAACCCAGTTCTCTCTCAACAATCAAAACTGAAACTCGATGTTGTTTCTTTCAACAGATCTGGTTTTATAAACCTGAATTTTGTGGATAACAATAATGGGTCATACACTGGTTATTATACGGCCAAGAACGTCGGAACATATGAGATTTGTGCTTCCTTTGATGGAAAACATTTATCACCCTGCCCCTTCAGAGTCAATGTTTATGGTGCTGAATATTTTCCCAATGCATTCAATGATACTGTTTCTGTGTGGGAGGACGAGTCAATTGCTTTTGACATTCTAGCAAATGACTACTTCGCTGGTGACAGTGCTATTATTGTTTCACTTACAAACCCAAATCATGGTTCTCTCATACAGTATGAAAGGCTTGTTAGATATACTCCATATAAGGATTATTATGGGATTGATTTCTTCACGTATGTGATATCTGACATAAATGGAAATCTCGCTTCTGCTTCTGTGAGCATTTCTGTTCTCAGTATACCACCCCAAATTGCTTCTTTTCCAACTGAACTACAAGCAACTGAAGATATCATAAGTCCAAGAATTGGGGGCTTCCCCGGCTTTGAGATACGATATTCAGATGGGGCGGAGAAAATTTCTGTGAATGTTAGTGCCCATTCAGGGAGTATCTTTCTTTCACCTATTTTGATGCAATTTGACCGGTCGATGTGGTGTAGTTTCTCTGTTAGTAATATGGATGAAGAATGGAAGGATTTAAATTTCGAAGGTTGTTTGGAAGGGATAAACACTGCTCTTCAATCAATTCAGTATCTCGGAAAGGAGAACTTCTGTGGTACTGACACAATCAGAGTCTCAACTAGGAATAAGAACGGGATGAATACATTGGATGTTCCAATTTTCGTTGAGCCAATTAATGATGTTCCATATATTCAGGCCCCTGAAATCATAATCTTGAAGAGTGATGATGAAGAGTCACTTATATTTGACAAAGAAAGAGACAAGTATAATTTTTCCGTCGGAGATCCAGATATTTTTACCTTTCCTGCAGGTGGTGAAGCCAACTTCATGGTCATTTTTTCCATGGAAGTCAATGATGGAAATTTAGTCACGAATCTTCCGGCCGAGCTCATCAATACAACTGAACTGAAGCTAAAGAATAGTCAGCAGTGGCAGCCTCTTCAGACATATGTTTCCATTGCCAAGCATTTTACAGTAAAAGCCAAAGGAATTAGATTCAGGGGAACACTCCACCATTGCAATGATGTTATGCAAAAACTAGTATATCGTGGCAGAAAACATGGTACTTTATTGACAATGACAGTGAATGATATGGGAAACTACGGATGTTATCCAGATTGTACTGACAAAATGTCGGTGCCTCTATTCGCCGAAGCTACTATCCAACTTATAAGAAGGAAGCCAATGACAGCAGTCTTGGCCCGTTCATTGGGGTCAGCAATAGCAATTGAATTCGTAGTGATTTTCACTCTTGCCATACTGCTTATATTTTTCACATGCAAATGTGCAATCCTTCTCGTTCACGAAAGAACGAAAGAAAAATCAAAGGGTAGCGAACTGCCGAATTCCCTGAAAAAGAATGTACGTACCTGTTCAGTTCTGGCATTTCATTCGTCCTAA 3093 38.22 KPKFAFSWFNDKDKFQAGQIATVRIKVLENFDKIDRDKLILTLTVNGKTGNSSFISGVLSDFGGDPNNWSISFTTISVGLFNVMINEDHLQVFDSSLHFLVVPGKIYPSASIASWTNLVNEFDAGTKASISILPKDAFGNNISSVDEPNAFNFTLFTYLANNSIASLSNTTNMGWNEFGYINIEFVVVLAGNFLLHVECGNQTLREAPLSFEVNPGGPLEVSNCVVHWDFEPYAWQLFSKMEIFVLQRDKFGNFVPGLYAFDAEIVNREKNLSIPVSDLHFREVESGIQLFSFTNLEAGNFLLTISDVEHNIIISNMPYAYTVYIGYCDGLQSVVNGTGINNSVAGELSEFYVYLNDVYQYPTPIELQWLRIQIVREIDVYALLPSIHPINGTLMLLKLFSLRYTLVTNGAMFLIQSASDSKILANAFDVSYTPDKSGVYSIFVFCGNILLNGGHSIKKEVASGGVNISLSGVVKFSSKVPKLTENEIVVQLMDSFWNPVLSQQSKLKLDVVSFNRSGFINLNFVDNNNGSYTGYYTAKNVGTYEICASFDGKHLSPCPFRVNVYGAEYFPNAFNDTVSVWEDESIAFDILANDYFAGDSAIIVSLTNPNHGSLIQYERLVRYTPYKDYYGIDFFTYVISDINGNLASASVSISVLSIPPQIASFPTELQATEDIISPRIGGFPGFEIRYSDGAEKISVNVSAHSGSIFLSPILMQFDRSMWCSFSVSNMDEEWKDLNFEGCLEGINTALQSIQYLGKENFCGTDTIRVSTRNKNGMNTLDVPIFVEPINDVPYIQAPEIIILKSDDEESLIFDKERDKYNFSVGDPDIFTFPAGGEANFMVIFSMEVNDGNLVTNLPAELINTTELKLKNSQQWQPLQTYVSIAKHFTVKAKGIRFRGTLHHCNDVMQKLVYRGRKHGTLLTMTVNDMGNYGCYPDCTDKMSVPLFAEATIQLIRRKPMTAVLARSLGSAIAIEFVVIFTLAILLIFFTCKCAILLVHERTKEKSKGSELPNSLKKNVRTCSVLAFHSS 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47992282 47997494 + Bma015685.1 Bma02g00906 78156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00906 1030 PANTHER JITTERBUG, ISOFORM N 3 965 IPR044801 GO:0030036|GO:0051015
Bma02g00906 1030 SUPERFAMILY E set domains 328 453 IPR014756 -
Bma02g00906 1030 Gene3D - 571 653 - -
Bma02g00906 1030 PANTHER JITTERBUG, ISOFORM N 3 965 - -
Bma02g00906 1030 Gene3D Immunoglobulins 104 214 IPR013783 -
Bma02g00906 1030 Gene3D Immunoglobulins 466 564 IPR013783 -
Bma02g00906 1030 SUPERFAMILY E set domains 486 567 IPR014756 -
Bma02g00906 1030 ProSiteProfiles Filamin/ABP280 repeat profile. 505 564 IPR017868 -
Bma02g00906 1030 Pfam Filamin/ABP280 repeat 486 561 IPR017868 -
Bma02g00906 1030 Pfam Filamin/ABP280 repeat 327 448 IPR017868 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00906 - - - qsu:112028221 1325.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g162 . . . . . Bpe14g01122 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0134 Cone4ag0139 . . . . Blo02g00498 . . Bda13g00194 . . Bma02g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016220 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00906 Bma_Chr02 FPKM 20.973215 22.12044 16.788841 17.771809 29.173836 29.784081 29.686859 8.54129 9.221925 9.471806