Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00927 ATGGCTCTACAAAAGTTTTTACCTTCTACTGATGTGACTTCGCCTAATATGAAACATTTAAGTTTTCCTACTGAGACACGCAAGGAAACTGATGTTGCTAATTCTGAGCCTGCCCATAATGTGGAGCCTGATGTGGAGATTGACATTAGAGAAGTTTATTTTCTCATTATGCATTTTCTTTCTTCTGGGCCATGCCAAAGAACTTATGGACAGCTCTGGAATGAACTTCTTGAGCATCAACTCTTACCCAGAAGATATCATGCTTGGTATTCAAGAAATGGGGGTTACTGCGCGGATGAGAATGATGATGGTCTGTCCTTTCCTTTAAGTTACAATAAATTGGTGGAGAGGTATACCCACGTGAAAAAAGATCACTTAGTAAAGCTTTTGAAGCAGTTGCTACTTTCTAAAACCTCTCCATTGCACGGCACGAATGGTGGAACTGCTCCAAATGCATATGATGTTCCTACTCTTTTGGGAACCGGCTCTTTTTCACTTTTAAGTTGTAAGTCTGTTGTGATATTTTATCAATTTTCAGCTGACAGAGATGAAAGAATTAATGAACCAACTCATCCCTCTGCATATATGCGATGGCCCCATATGAAAGCTGATCAGGTTCGCGGATTAAGTTTGAGGGAAATTTCAGGTGGATTTTCCAGACATCAACGTGCACCTTCTATACGTGCAGCATGTTATGCCATTGCAAAGCCATCAACCATGGTACAAAAGATGCAAAATATCAAGAAACTACGGGGGCATCGAAATGCTGTCTACTGCGCAATATTTGATCGATTGGGAAGGTATGTCGTAACTGGTTCAGATGATCGCCTTGTAAAAATTTGGTCAATGGAAACTGCATATTGTTTGTCAAGCTGTCGTGGACACGAAGGTGATATTACTGATTTAGCTGTCAGTTCCAACAATGCTGTGGTTGCATCCTCTTCCAATGATTTTGTCATTCGTGTTTGGCGTCTTCCTGATGGGCTGCCAATTTCGGTTTTGCGAGGGCATTTGGGTGCTGTTACAGCCATTGCATTTAGTCCAAGGCCTGGATACCAGCTTCTATCATCATCTGATGATGGAACCTGTAGGCTGTGGGATGCTAGGAACTCGTCGCAACATAATCCACGAATTTACATGCCAAAGCCATTAGATTCTGTAACTGGAAGGAGCAGTGGCTCCTCTTCTAGTACTGTTTCTCATAATCATCAAATATTTTGCTGTGCTTTTAATGCCAACGGGACCATTTTTGTCACTGGTAGCTCAGACACTCTTGCTAGGGTATGGAATGCATGTAAACCAAACATTGATAACCCAGACCAACCTAATCACGAGATAGATGTGTTAGCTGGCCATGAGAATGATGTTAATTATGTGCAATTTAGTGGATGTGCTGTGTCCTCAAGATTTATTACAGCCGACACTGTAAAGGAAGACTGTGGTCACAGATTTCGAAATTCCTGGTTTGTTTGTAGGTTTACTCATGACAATATAGTTACCTGTTCTCGTGACGGTAGTGCAATTATTTGGGTACCTAGATCACGCAGATCACATGGGAAATCTGGACGATGGACTAGGGCCTATCATTTAAAAGTACCGCCTCCACCAATGCCTCCACAACCTCCACGAGGAGGTCCTCGTCAAAGAATTCTTCCAACTCCTCGTGGTGTTAATATGATCATTTGGAGCTCAGATAACCGCTTCGTCCTTGCTGCTCTAATGGGGAGACTATGCTACGAACACTTAGGGAACATGATTGAATGGGTTGATATGAATTTCACGACATTCAATCTCTTTTTTAGGACTATAATAGTAAAAAATGTGATTTGTTTTTATATTATTATCTTTACATACGTTCTGGATGTTCATCCTTTCAATTCTCGGATAGCTATGAGTGCGGGTTATGATGGAAAAACTATAGTTTGGGATATATGGGAAGGAACTCCTATTCAGATATACGAAATTTCTCGGTTCAAACTTGTTGATGGAAAGTTTTCATCGGATGGAACATCAATAATTCTTTCAGATGATGTGGGTCAGCTATATATATTAAGCACAGGACAAGGAGAGTCCAAACAGGATGCCAAGTATGACCAGTTCTTCCTAGGGGATTATCGTCCACTTGTTCAAGATACTTTTGGAAATGTAGTTGACCAAGAAACTCAACTTGCTCCTTACAGACGGAATATGCAAGATCTTCTTTGTGACTCAGGCATGATACCGTACCCTGAACCTTACCAAAGTATGTACCAGCAGAGACGGTTAGGAGCTCTGGGTATTGAATGGCGTCCTTCTTCTCTAAAGTTTGCTGTTGGGCCTGACTTCAGTCTGGATCCTGCATATCAGATGCTGCCTTTGGCGGACTTGGACTTATTGATTGAACCACTTCCAGAGTTTGTCGATGCAATGGATTGGGAGCCAGAAAATGAAGTACAAAGTGATACTACTGATTCAGAGTATAATGTCCCTGAAGACTATTCTACCGGAGGAGAGCAGGGGAGTTTGAATTCAAATTCGTCCATAGACCCAGAATGCAGTGGTGGAGATACTGGAGGAGAAGATGCCCTAAGAGATCATCTTCGTAGATCAAGAAGGAAAAAACATAAGGCAGATATGGAGATCATGACATTTTCTGGAAGACGTATTAAAAGGAGGAATTTGGACGAGTATGATGGACTTCCTATTAAAAGTAACAGAAATAGGAAAATGAAATTTCATTTAAAAACTTCAAAGAGGAAATTAGCATCAAAATCATTAAGGCCTCAAAGAGCTGCTGCACGCAATGCTCGTCATTTCTTTTCTAAACTAAAAGGAAAATCTACTGATGTAGAGGACGATGATGGCTCAGGAAGTGATTCATCAGATAGTGAATCTATCTTGCAAGATTCGATCATTCTGAGTGATGATTCTGATAAGTCTTTGCAGAACATAACCAAGCTTTCAAAAGGAAAAGAAGTATACATGGACGAATCTGAGAATGTAGTTCAACCTTTTGAACTGCCAGAATCTCATATGAATTCCTCATCTACCTGGAACGAGATTAATTCCTCTTCTGAATTGTGTAAGAGCACTTTACCTGTCTCGACAAAAATAAGGTTGAAGGCAAACATTGATCCTGCTTCGCCGAAACGCGAAAGAAAATCCTTGGTAGCAAGTATGAGTAATGGTAAACATGATGTATTACCTGGAAGTCCTAAGTATCCATTATTGCCCCCTGACGATGCCATTGACAGAAGTAATTTGGATAATATGAGTGATGGTTCACAAAAAGATGATATGTTGGAAGATAAGTCAATGCACTCAAATCCTAACAAAATGTTCAGTGTTGTCTACAGAAGATTGAAGCCACACAAAGGAAGGACCAGTTTGGAAGTCGATGGAAGTGGCACACGAGATTTCTCTTCATATTTGAGCAATAACAATTCACATATTGGAATAGAGGAAAATGGAGGTACAGTTGATGTGGCCCACAGGACTCGATCATTGAGGCCAAAGGCTTACGCAAGTGATTCAAATAATCTGAGTGACAATCTTAAGTATGAGGAAGTTCTGGACTTGGGACATATGTCACGAAATTTACAGAATACCACCTCAACAAGCAGATATCAATTCAAGGATGAGGAGTGGGGATCGAAATCAATTTCAACAGTTGGACCAAGGTCTACTAGAAATAGAAGGGCTAATTCTGCTCGTGACACAAGTCCGATGGATAAAAGGAAGTCTCATCTAATAACAAGAAAAGGATCGTGGTTAATGATGTCTGTACATGAAGGTGGCTCCCGTTATGTTCCCCAACTAGGGGATGAAGTTGTGTATTTGAGACAGGGGCATCAAGAATACATTGAATATTGTCGCTCAAGAGAAGTGGGGCCTTGGATTTCAATGAAGGGAACCATTAGGGCTGTCGAATACGGTAAAGTTGTTGGACTTGAGTATTCCACTGTTTGTGGATCTGGGGCTAGCTGCTGCAAGATGACACTTGAGTTTGTAGATCCTGATTCCAGTGTATTTAGTGGATCTTTCAAGTTGTCTCTTCCTGAAGAGACTAGTTTCCCAGATTTTCTTGTTGAAAGAAGTCGATTTGAAACTTCTTTACAAAGAAATTGGAGATTCAGGGATAAATGCAAAGTGTGGTGGAGAAATGAGGGGGAAGAAGATGGTAGTTGGTGGGAGGGCCGTATTACTGCTGTGGAGGCAAAATCTTCTGAATTTCCTGAAAGTCCTTGGGAGAGATATAGAATACGTTATAAGAGTGAACCAGCAGACACCCATTTGCATAGTCCTTGGGAGCTCTTTGATGATGACACACATTGGGAACAGCCTCGAATTGATTATGAATGTAAAGCCAACCTATTATCCGCCTTGAAAAAATTAGAGTTAGGTAGTACAGGCCAGGATCGATACGGAGTTCAGGAATTGAGCCGTGTTTCTCAGCGACCACAGTTTAGGAACCGGTTTCCAGTTCCATTAACTCTTGAAGTGATTCAATTAAGACTAGAGAGTGATTATTACCGGAGTATCGAAGCTTTGAAGCATGATTTTGTAGTCATGGTGTCAAATTTCGAAGCCTACTCTGCAAAGAACGAACATTTGTTAAAAAAATTAAAACGATTATCAGAGTGGTTCAATAGGACACTGTCTTCATCATAG 4650 40.84 MALQKFLPSTDVTSPNMKHLSFPTETRKETDVANSEPAHNVEPDVEIDIREVYFLIMHFLSSGPCQRTYGQLWNELLEHQLLPRRYHAWYSRNGGYCADENDDGLSFPLSYNKLVERYTHVKKDHLVKLLKQLLLSKTSPLHGTNGGTAPNAYDVPTLLGTGSFSLLSCKSVVIFYQFSADRDERINEPTHPSAYMRWPHMKADQVRGLSLREISGGFSRHQRAPSIRAACYAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRLGRYVVTGSDDRLVKIWSMETAYCLSSCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHLGAVTAIAFSPRPGYQLLSSSDDGTCRLWDARNSSQHNPRIYMPKPLDSVTGRSSGSSSSTVSHNHQIFCCAFNANGTIFVTGSSDTLARVWNACKPNIDNPDQPNHEIDVLAGHENDVNYVQFSGCAVSSRFITADTVKEDCGHRFRNSWFVCRFTHDNIVTCSRDGSAIIWVPRSRRSHGKSGRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIIWSSDNRFVLAALMGRLCYEHLGNMIEWVDMNFTTFNLFFRTIIVKNVICFYIIIFTYVLDVHPFNSRIAMSAGYDGKTIVWDIWEGTPIQIYEISRFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESKQDAKYDQFFLGDYRPLVQDTFGNVVDQETQLAPYRRNMQDLLCDSGMIPYPEPYQSMYQQRRLGALGIEWRPSSLKFAVGPDFSLDPAYQMLPLADLDLLIEPLPEFVDAMDWEPENEVQSDTTDSEYNVPEDYSTGGEQGSLNSNSSIDPECSGGDTGGEDALRDHLRRSRRKKHKADMEIMTFSGRRIKRRNLDEYDGLPIKSNRNRKMKFHLKTSKRKLASKSLRPQRAAARNARHFFSKLKGKSTDVEDDDGSGSDSSDSESILQDSIILSDDSDKSLQNITKLSKGKEVYMDESENVVQPFELPESHMNSSSTWNEINSSSELCKSTLPVSTKIRLKANIDPASPKRERKSLVASMSNGKHDVLPGSPKYPLLPPDDAIDRSNLDNMSDGSQKDDMLEDKSMHSNPNKMFSVVYRRLKPHKGRTSLEVDGSGTRDFSSYLSNNNSHIGIEENGGTVDVAHRTRSLRPKAYASDSNNLSDNLKYEEVLDLGHMSRNLQNTTSTSRYQFKDEEWGSKSISTVGPRSTRNRRANSARDTSPMDKRKSHLITRKGSWLMMSVHEGGSRYVPQLGDEVVYLRQGHQEYIEYCRSREVGPWISMKGTIRAVEYGKVVGLEYSTVCGSGASCCKMTLEFVDPDSSVFSGSFKLSLPEETSFPDFLVERSRFETSLQRNWRFRDKCKVWWRNEGEEDGSWWEGRITAVEAKSSEFPESPWERYRIRYKSEPADTHLHSPWELFDDDTHWEQPRIDYECKANLLSALKKLELGSTGQDRYGVQELSRVSQRPQFRNRFPVPLTLEVIQLRLESDYYRSIEALKHDFVVMVSNFEAYSAKNEHLLKKLKRLSEWFNRTLSSS 1549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48734960 48752872 - Bma015712.2 Bma02g00927 78177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00927 1549 Gene3D - 219 397 IPR015943 GO:0005515
Bma02g00927 1549 SUPERFAMILY Bromodomain 1478 1546 IPR036427 GO:0005515
Bma02g00927 1549 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 1134 1547 - -
Bma02g00927 1549 MobiDBLite consensus disorder prediction 22 39 - -
Bma02g00927 1549 ProSitePatterns Trp-Asp (WD) repeats signature. 354 368 IPR019775 -
Bma02g00927 1549 MobiDBLite consensus disorder prediction 7 21 - -
Bma02g00927 1549 Gene3D - 1466 1548 IPR036427 GO:0005515
Bma02g00927 1549 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 370 - -
Bma02g00927 1549 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Bma02g00927 1549 SUPERFAMILY WD40 repeat-like 240 680 IPR036322 GO:0005515
Bma02g00927 1549 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 40 1007 - -
Bma02g00927 1549 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515
Bma02g00927 1549 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 285 - -
Bma02g00927 1549 SMART WD40_4 327 367 IPR001680 GO:0005515
Bma02g00927 1549 SMART WD40_4 392 430 IPR001680 GO:0005515
Bma02g00927 1549 SMART WD40_4 442 511 IPR001680 GO:0005515
Bma02g00927 1549 SMART WD40_4 285 324 IPR001680 GO:0005515
Bma02g00927 1549 SMART WD40_4 243 282 IPR001680 GO:0005515
Bma02g00927 1549 SMART WD40_4 607 643 IPR001680 GO:0005515
Bma02g00927 1549 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 325 - -
Bma02g00927 1549 MobiDBLite consensus disorder prediction 1212 1241 - -
Bma02g00927 1549 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 376 IPR001680 GO:0005515
Bma02g00927 1549 PANTHER WD REPEAT DOMAIN 9 1134 1547 - -
Bma02g00927 1549 PANTHER WD REPEAT DOMAIN 9 40 1007 - -
Bma02g00927 1549 MobiDBLite consensus disorder prediction 913 959 - -
Bma02g00927 1549 Gene3D - 617 707 IPR015943 GO:0005515
Bma02g00927 1549 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 430 - -
Bma02g00927 1549 CDD WD40 246 510 - -
Bma02g00927 1549 MobiDBLite consensus disorder prediction 1225 1241 - -
Bma02g00927 1549 Pfam WD domain, G-beta repeat 245 282 IPR001680 GO:0005515
Bma02g00927 1549 Pfam WD domain, G-beta repeat 330 367 IPR001680 GO:0005515
Bma02g00927 1549 Pfam WD domain, G-beta repeat 400 430 IPR001680 GO:0005515
Bma02g00927 1549 Pfam WD domain, G-beta repeat 288 323 IPR001680 GO:0005515
Bma02g00927 1549 MobiDBLite consensus disorder prediction 1084 1099 - -
Bma02g00927 1549 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 430 IPR001680 GO:0005515
Bma02g00927 1549 Gene3D - 398 578 IPR015943 GO:0005515
Bma02g00927 1549 MobiDBLite consensus disorder prediction 814 845 - -
Bma02g00927 1549 MobiDBLite consensus disorder prediction 377 396 - -
Bma02g00927 1549 ProSiteProfiles Bromodomain profile. 1480 1532 IPR001487 GO:0005515
Bma02g00927 1549 MobiDBLite consensus disorder prediction 1071 1101 - -
Bma02g00927 1549 CDD Bromo_WDR9_I_like 1421 1549 - -
Bma02g00927 1549 MobiDBLite consensus disorder prediction 1 39 - -
Bma02g00927 1549 MobiDBLite consensus disorder prediction 808 870 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00927 K11797 PHIP, DCAF14; PH-interacting protein - ccav:112517991 1460.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00927 Bma-Chr2:48734960 Bma04g00486 Bma-Chr4:4250811 1.84E-07 dispersed
Bma02g00927 Bma-Chr2:48734960 Bma01g02168 Bma-Chr1:78617039 1.94E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00927 Bma_Chr02 FPKM 0.446936 0.0 0.0 0.0 0.107245 0.328365 0.0 0.0 0.0 0.298659