Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00928 AGATGCAGGAACAAAGATATAAGCATATCTCAGAGCAGGGATTTATCGACTGGCATACCGCAGTTCATAGTTGAAGTGGTGAATACGTGTGTTTGTGGATGTGATCCTTCAGAAATTCATCTTCACTGTGGCTGGTTTGCCTCTGCGAGAATTGTAAACCCTAGAATGTTCAAAAGGGTAGGGTTTGACGACTGCTTGGTGAACGAGGGGAAGCCATTGAAAAGCAGCCAAATTATCAGATTCACCTACTCTAACTCATTTATGTATCCCCTTGTTTTCAAGTCTGCAAAGTTGTGCTAA 300 42.33 RCRNKDISISQSRDLSTGIPQFIVEVVNTCVCGCDPSEIHLHCGWFASARIVNPRMFKRVGFDDCLVNEGKPLKSSQIIRFTYSNSFMYPLVFKSAKLC 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48970453 48970752 + Bma015715.1 Bma02g00928 78178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00928 99 PANTHER PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED 2 99 IPR040361 -
Bma02g00928 99 PANTHER PROTEIN TAPETUM DETERMINANT 1-LIKE 2 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00928 - - - vvi:104879204 176.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00928 Bma-Chr2:48970453 Bma12g00552 Bma-Chr12:22992087 3.22E-50 dispersed
Bma02g00928 Bma-Chr2:48970453 Bma06g00272 Bma-Chr6:3770963 5.19E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g67 . . . . . Bpe14g01100 . . . . . . . . . . . . . . . . . . Cla06g00429 Cam06g0452 Cec06g0459 Cco06g0458 Clacu06g0439 Cmu06g0440 Cre06g1217 . . . . . . . . . . . Bda13g00216 . . Bma02g00928 . . . . . . . . Cpe12g00319 . Bhi12g01927 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000623 6 7 1 9 5 3 4 3 3 2 3 3 3 4 2 3 3 4 3 3 2 2 3 2 2 3 4 5 2 1 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00928 Bma_Chr02 FPKM 128.239487 139.742294 85.553543 88.740891 59.607933 57.230797 59.074699 89.442787 88.581993 86.310066