Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00930 ATGAGTTCAAATGTAACAGTGCTTGGAGTTCCTCTTCCTTCAAACCTTGCATTTAACGATGCTAGCCCAGAATGGATGAACAAAGCCGACAATGCTTGGCAGCTCACTGCGGCCACACTTGTGGGGCTGCAAAGCGTACCGGGGCTCATAATTCTGTACGGTGCGGCGGTGAAGAAGAAATGGGCTATAAACTCAGCATTCATGGCACTCTACGCCTTTGCATGTGTCCTTATTTGTTGGGTGCTGTGGGGTTATAGATTGTCATTTGGCGAGAGACTGATTCCATTTTGGGGGAGAATTAACTTTGCTGTTGACCAGAAGTTCCTACTCCAGCAAGGATTTGCGGGGATGTTCCCTAATGCTACAATGGTGTATTTCCAGTTTGTTTTTGCAGCGATTACTCTTATTTTGATCGCCGGCGCAGTGTTGGGCCGGATGAACTTCTATGCGTGGATGCTGTTTGTGCCTTTGTGGCTTACTTTTTCTTATACAATTGGAGCATTTTCCATCTGGAGTCCGAAAGGTTTCCTCACCAAACTAGGTCTGATTGATTATTCTGGTGGTTATGTCATTCATTTATCTTCAGGCGTGGCTGGTTTCACTGCTGCATATTGGGTTGGTCCTCGTAATTCAAAGGACAGGGAAAACTTCCCTCCGAACAACGTCCTTCTCATGCTAGCCGGAGCAGGATTGCTCTGGATGGGATGGACGGGGTTCAACGGAGGAGACCCTTATGTGGTCAGCGTTGATGCTTCATTGGCTGTTTTGAACACTCATGTCTGCACTGCGGCAAGTCTGCTCACTTGGCTTGTTCTTGATGTCATCTTCTTTGGAAAACCTTCTATTATTGGCGCTGTTCAAGGCATGATCACTGGTTTGGTCTGCATTACACCCGCAGCCGGCATAGTGCAGGGTTGGGCAGCAATCCTAATGGGGATATTATCAGGTTCCATTCCTTGGTTTACAATGATGGTTGTCCACAAGAAATCTAAGCTCCTTCAAAAGGTGGATGACACAATGGCTGTCTTTCACACCCATGCCATCGCTGGAAGCCTCGGAGGAATCCTTTCCGGGGTGTTCGCCGAGCCAAAGCTATGTTACTTGTTTTACGGCGCTTACAACGATTATGTTGGCCTATTTTACGGCTTTCAAATGGGAAGAGTCCATGACGGGTTTCGACAAGTCGGAATTCAACTCATCGGAATCTTATTTATCGTCTGTCTCAACATGATGACCACTAGTTTAATCTGTCTGCTAGTGCAGTTAATTGTTCCTCTGAGGATGTCGGATGAAGACATGGCTGTGGGAGATGAAGCAGCTCACGGAGAAGAAGCCTATGCCATATGGGGAGATGGTGAAAAGCTTGAAAAGTTCATGCACAGTGGAATGGGCTATGCTGATGTTGAAGCCTCCAACTATTCCAAATATAATAAAGGTGGTGGCCAAATTGAGATGGGTAGGGCCTGA 1467 46.83 MSSNVTVLGVPLPSNLAFNDASPEWMNKADNAWQLTAATLVGLQSVPGLIILYGAAVKKKWAINSAFMALYAFACVLICWVLWGYRLSFGERLIPFWGRINFAVDQKFLLQQGFAGMFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTIGAFSIWSPKGFLTKLGLIDYSGGYVIHLSSGVAGFTAAYWVGPRNSKDRENFPPNNVLLMLAGAGLLWMGWTGFNGGDPYVVSVDASLAVLNTHVCTAASLLTWLVLDVIFFGKPSIIGAVQGMITGLVCITPAAGIVQGWAAILMGILSGSIPWFTMMVVHKKSKLLQKVDDTMAVFHTHAIAGSLGGILSGVFAEPKLCYLFYGAYNDYVGLFYGFQMGRVHDGFRQVGIQLIGILFIVCLNMMTTSLICLLVQLIVPLRMSDEDMAVGDEAAHGEEAYAIWGDGEKLEKFMHSGMGYADVEASNYSKYNKGGGQIEMGRA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49092498 49094490 + Bma015720.1 Bma02g00930 78180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00930 488 Gene3D Ammonium transporter AmtB like domains 13 449 IPR029020 -
Bma02g00930 488 TIGRFAM amt: ammonium transporter 30 446 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bma02g00930 488 Pfam Ammonium Transporter Family 32 446 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bma02g00930 488 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005887
Bma02g00930 488 PRINTS Rhesus blood group protein signature 254 276 IPR002229 GO:0005887
Bma02g00930 488 PRINTS Rhesus blood group protein signature 223 241 IPR002229 GO:0005887
Bma02g00930 488 SUPERFAMILY Ammonium transporter 25 428 - -
Bma02g00930 488 ProSitePatterns Ammonium transporters signature. 184 209 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bma02g00930 488 PANTHER AMMONIUM TRANSPORTER MEP2 10 485 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bma02g00930 488 PANTHER AMMONIUM TRANSPORTER 10 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00930 Bma-Chr2:49092498 Bma14g01220 Bma-Chr14:18758158 7.98E-25 dispersed
Bma10g00281 Bma-Chr10:2530463 Bma02g00930 Bma-Chr2:49092498 0 transposed
Bma10g00340 Bma-Chr10:3212655 Bma02g00930 Bma-Chr2:49092498 0 transposed
Bma15g00616 Bma-Chr15:7829645 Bma02g00930 Bma-Chr2:49092498 0 transposed
Bma15g00927 Bma-Chr15:33383012 Bma02g00930 Bma-Chr2:49092498 0 transposed
Bma02g00930 Bma-Chr2:49092498 Bma06g01463 Bma-Chr6:51298585 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00930 K03320 - csv:101210590 772.696