Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00937 AAGGAACAAATGGCGAAACACGAAGAGCTTCCCATTCCCGTCTTCTCAACCTTGGAGCCTGTCTACGGCGGCGGCTCTCAGCTCGAAGAAGCTCAGCTTCGATTCGATCTTTTGAAATCCAAGTTTCTTCAAGTATTTGGTAGAGTGAACTTGATCGGAGAGCACATTGATTATGAGGGATACTCGGTGTTGCCCATGGCAATTCGGCAAGATACTATTGTCGCTATAAGGAAGAATTATGATGGTGAAAAGCTTCTCAGAATTGCTAATGTGAATGATAAATATTCCATTTGCTCTTATCCTGCCGATCATGATCAGGAAATTGATTTGAAGAATCACAAATGGGGGCATTACTTTATTTGTGGGTACAAAGGCTATCATGAATATGCTAGATCAAAAGGAATTGATGTTGGTTTACCAGTCGGGCTAGATATTCTTGTCGATGGAACTGTTCCTACAGGTTCTGGGCTATCAAGCTCTGCAGCATTTGTTTGCTCTTCCACTATTGCTATTATGGCTGCCTTTGATGTGAATTTCCCAAAGAAAGAAGTTGCCCAGCTTACATGTGAATGTGAAAGACACATTGGTACACAATCTGGTGGAATGGATCAGGCAATATCCGTTATGGCCAAATCAGGATTTGCGGAGTTGATTGATTTCAATCCTATCCGAGCCACTGATGTGAAACTTCCTGCTGGGGGAACTTTTATTATAGCTCATTCTCTGGCGGAATCTCAGAAAGCTGTCACTGCTGCTACAAATTACAATAATAGAGTCGTTGAATGTCGGCTGGCTGCAATTGTACTTGGGATAAAGCTTGGAATGAAACCACAAGAAGCAATATCAAAAGTGAAAACACTGTCTGATGTTGAAGGGCTGTGTCTATCATTTGCTTCTAGTCGTGGCTCTTCAGATCCTGTCCTTGCTGTACAGGCACTATTGAAGGAGGAACCTTATACTGCTACAGAGATTGAGGAAATCACAGAAGAAAATCTACCATCAGTGTTGGGCAATTCTCCTACTTCATTGGAAGTGTTGAAAGCTGCAGAGCACTTCAAGTTGCATCAGAGAGCCTCTCATGTCTATTCTGAAGCCAGAAGAGTTTATGCTTTTAAGGACACCGTATCATCAAATTTAGATGAGGACTTATTAAAGAAGCTTGGTGATCTTATGAATGACAGCCATTACAGCTGCAGTGTCCTTTATGAATGCAGCTGCCCAGAGTTGGAAGAACTAGTAAATATATGCCGGAACAATGGTGCTTTTGGGGCAAGGCTAACCGGGGCCGGATGGGGGGGTTGTGCAGTTGCATTGGTGAAAGAGAGCATAGTCCCCCAATTTATCCTTAATTTAAAGGAAAGCTACTACCAATCAAGAATTGATAAAGGGATCATCGGCAAGAATGATCTTGGTCTCTATATCTTTGCTTCCAAGCCATCAAGTGGAGCTGCAATATTCAAGTTTTAA 1467 42.33 KEQMAKHEELPIPVFSTLEPVYGGGSQLEEAQLRFDLLKSKFLQVFGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKNYDGEKLLRIANVNDKYSICSYPADHDQEIDLKNHKWGHYFICGYKGYHEYARSKGIDVGLPVGLDILVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKEVAQLTCECERHIGTQSGGMDQAISVMAKSGFAELIDFNPIRATDVKLPAGGTFIIAHSLAESQKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCLSFASSRGSSDPVLAVQALLKEEPYTATEIEEITEENLPSVLGNSPTSLEVLKAAEHFKLHQRASHVYSEARRVYAFKDTVSSNLDEDLLKKLGDLMNDSHYSCSVLYECSCPELEELVNICRNNGAFGARLTGAGWGGCAVALVKESIVPQFILNLKESYYQSRIDKGIIGKNDLGLYIFASKPSSGAAIFKF 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49246885 49250662 + Bma015729.1 Bma02g00937 78187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00937 488 Pfam Galactokinase galactose-binding signature 47 78 IPR019539 -
Bma02g00937 488 Pfam GHMP kinases C terminal 382 456 IPR013750 -
Bma02g00937 488 PRINTS Galactokinase signature 142 160 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bma02g00937 488 PRINTS Galactokinase signature 356 370 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bma02g00937 488 PRINTS Galactokinase signature 47 65 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bma02g00937 488 PRINTS Mevalonate kinase family signature 149 171 - -
Bma02g00937 488 PRINTS Mevalonate kinase family signature 423 440 - -
Bma02g00937 488 PRINTS Mevalonate kinase family signature 191 210 - -
Bma02g00937 488 PRINTS Mevalonate kinase family signature 45 69 - -
Bma02g00937 488 Gene3D - 229 457 - -
Bma02g00937 488 TIGRFAM gal_kin: galactokinase 41 457 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Bma02g00937 488 Gene3D - 41 228 IPR014721 -
Bma02g00937 488 PANTHER BNAA01G32760D PROTEIN 4 487 - -
Bma02g00937 488 Gene3D - 254 403 - -
Bma02g00937 488 PIRSF Galactokinase 29 487 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Bma02g00937 488 SUPERFAMILY GHMP Kinase, C-terminal domain 235 462 IPR036554 -
Bma02g00937 488 Pfam GHMP kinases N terminal domain 144 209 IPR006204 GO:0005524
Bma02g00937 488 ProSitePatterns Galactokinase signature. 47 58 IPR019741 -
Bma02g00937 488 ProSitePatterns GHMP kinases putative ATP-binding domain. 151 162 IPR006203 GO:0005524
Bma02g00937 488 PANTHER MEVALONATE KINASE/GALACTOKINASE 4 487 - -
Bma02g00937 488 SUPERFAMILY Ribosomal protein S5 domain 2-like 38 232 IPR020568 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00937 K18674 GALK2; N-acetylgalactosamine kinase [EC:2.7.1.157] - zju:107404688 837.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00937 Bma-Chr2:49246885 Bma02g00949 Bma-Chr2:49433254 0 dispersed
Bma02g00937 Bma-Chr2:49246885 Bma06g01458 Bma-Chr6:51257200 1.80E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g44 . . . . . Bpe14g01089 . . . . Cma06g01572 Cma14g01579 Car06g01336 Car14g01390 Sed02g1128 Cpe08g00143 Cpe03g01318 Bhi01g01101 Tan10g1088 Cmetu06g1064 . Hepe05g1365 . Lcy11g1328 . . . . . . . . Cone15ag0720 . . Lsi05g01410 . . Cme06g00801 Blo02g00471 Blo07g00132 . Bda13g00226 . . Bma02g00937 . . Cmo06g01566 Cmo14g01611 . . . . . . . . . . . . . Cla05g00717 Cam05g0784 Cec05g0790 Cco05g0786 Clacu05g0774 Cmu05g0739 Cre05g0813 . Csa03g01530 Chy06g00767 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005121 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00937 Bma_Chr02 FPKM 18.160105 19.117794 12.863384 13.521047 37.369377 41.661812 37.03352 19.217062 18.341309 18.709202