Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00943 ATGAAAAAGTGGTATGGAGGAGTGTTGATCTTGGCTCTTGCTTCAATCTTGTTTTTACGTTACGGCTTTGTTATCTTGGAGCCAGATGAGCAGTCTACTTATAACTTCTTCTTAAGTCATCATACTAATGAATCTCAAGCAAGAAATAGTGACCCTGTTGAAGTGGAAGGAACAAAGACATCGAAAAAGCTGAGTCTCGTGAACGTTGAAGGACTCAAAGATCTGATTTTTCCTGAAGGTATTCCTCGAATGCAGTTAAAATCCTTACTCCTATGGCCCCATATGAACCTCCTGTTGTCGAGGTCCGATGGTTTACCTGAAACGGCTCAAGGGGTGAAGGAGGCTTCTATAGTATGGAAAGAATTGTTGGAATTGATTAATGTGGAAAAGACTCTTAATTTCAGTGATGTTAACTCTTCAGAAGATAAAAAATGTCCTTTCTCGGTCAGCAAAAATGGCATTTTTATATTAAGCGATCACATTTTTATTGATCTCCCTTGCGGTATGGTTGAGGATTCTTCCATTTCACTTGTTGGAATACCCAATGGACTCAATGGAGGCTTCCAAGTCGAACTTTCCAGCTCCCGAATTTCAGGGGAGCCAAATCCTCCTACGATCCTGCATTACAATGTCAGTCTTCCTGGCGATAATTCAACTGAGGAGCCATTTATCGTTCAGAATACGTGGAATAATGAACTTGGATGGGGAAAACCAGAAAGATGTCCTGCAAATGGGTTAGGTAGCTCCAAGAAAGTCGATGGACTTGTTCGCTGCAATGGACTAGTTGTCAGAAGCACTCTAGAAGACAATCTTAATAAAAGTAGTTCAGTCGATGATATCCTCACCAATGTTTCAAGAGCAAGTGCTCGTGAAAGCGCTAATTTTCCATTTACTACTGGGAGTTTATTCACTGCCACCTTATGGGTTGGTTCGGAGGGGTTCCATATGACTGTCAATGGAAGGCATGAAACTTCTTTTGCATATGGTGAGAAATTCGAACCATGGGAAGTTAGTCGAGTCAAAATATCGGGTGGTTTAGATCTTTTATCTATCTTGGCTAAAGGATTGCCAGTTTCTGAAGATCACGAGTTTGTCGTTGATGCTCCCATCCTCAAAGCGCCCCCCATTTCGAGGAAAAGGCTCATCATGTTGGTAGGAGTTTTCTCTACCGCAAACAATTTTGAGAGGCGAATGGCATTGAGGAGGTCTTGGATGCAGTTCAATGCTGTACGACTCGGAGATGTAGCCGTCAGATTTTTTACTGGCCTTCACAAGAATTCTCAAGTGAACTTGGAACTGTGGAGAGAAGCCAGAGTCTTCGGAGATATTCAGATTATGCCTTTTGTTGATTATTACAGCCTGATAACGCTCAAAACGATCGCCATTTGTATTTTTGGGACCAAAATTCTTCCTGCGAAATATATCATGAAGACTGATGATGATGCTTTTGTCCGAATCGATGAAGTTCTTGCAGGCCTCAAGAGCAAGGCAGCGGCTCCTACTTGCCTCTTGTACGGTCTCATGTCCTTTAAATCGGCACCCGATAGGGATAAAAGCAGCAAGTGGTATATTAGTGAAAAGGAATGGCCTCACGCTACGTACCCACCATGGGCACATGGTCCGGGTTACATCATCTCCCGAGACATTGCGAAATTCATCGTCCAGGGCCATCGAGATGGAGTCCTCCAGCTTTTCAAACTAGAAGATGTGGCCGTGGGAATATGGGTGCAGCAATTCAAGAACAGTTGTAAAGAAATCAATTACATAAACGACGACAAGTTTTTCAACGCCGGATGCGAGTCCAACTACGTGGTTGCCCACTACCAGAGCCCGAGGTTGGTTTTATGTCTTTGGGAGAAGCTGCAGAAGGTTCATCAGCCCATCTGCTGCGAGTAA 1896 43.46 MKKWYGGVLILALASILFLRYGFVILEPDEQSTYNFFLSHHTNESQARNSDPVEVEGTKTSKKLSLVNVEGLKDLIFPEGIPRMQLKSLLLWPHMNLLLSRSDGLPETAQGVKEASIVWKELLELINVEKTLNFSDVNSSEDKKCPFSVSKNGIFILSDHIFIDLPCGMVEDSSISLVGIPNGLNGGFQVELSSSRISGEPNPPTILHYNVSLPGDNSTEEPFIVQNTWNNELGWGKPERCPANGLGSSKKVDGLVRCNGLVVRSTLEDNLNKSSSVDDILTNVSRASARESANFPFTTGSLFTATLWVGSEGFHMTVNGRHETSFAYGEKFEPWEVSRVKISGGLDLLSILAKGLPVSEDHEFVVDAPILKAPPISRKRLIMLVGVFSTANNFERRMALRRSWMQFNAVRLGDVAVRFFTGLHKNSQVNLELWREARVFGDIQIMPFVDYYSLITLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLAGLKSKAAAPTCLLYGLMSFKSAPDRDKSSKWYISEKEWPHATYPPWAHGPGYIISRDIAKFIVQGHRDGVLQLFKLEDVAVGIWVQQFKNSCKEINYINDDKFFNAGCESNYVVAHYQSPRLVLCLWEKLQKVHQPICCE 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49325120 49329233 - Bma015737.1 Bma02g00943 78193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00943 631 SMART Gal_bind_lectin_2 165 353 IPR001079 GO:0030246
Bma02g00943 631 SUPERFAMILY Concanavalin A-like lectins/glucanases 163 354 IPR013320 -
Bma02g00943 631 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 161 354 IPR001079 GO:0030246
Bma02g00943 631 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 75 623 IPR002659 GO:0006486|GO:0016020|GO:0016758
Bma02g00943 631 Gene3D - 160 352 - -
Bma02g00943 631 Pfam Galactoside-binding lectin 162 352 IPR001079 GO:0030246
Bma02g00943 631 Pfam Galactosyltransferase 395 580 IPR002659 GO:0006486|GO:0016020|GO:0016758
Bma02g00943 631 Gene3D - 375 609 - -
Bma02g00943 631 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE GALT1 75 623 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00943 K20843 GALT2S; hydroxyproline O-galactosyltransferase 2/3/4/5/6 [EC:2.4.1.-] - qsu:112022347 865.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00943 Bma-Chr2:49325120 Bma15g00154 Bma-Chr15:1643726 0 dispersed
Bma02g00943 Bma-Chr2:49325120 Bma14g01645 Bma-Chr14:34818741 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g220 . . . . . Bpe14g01082 . . . . . . Car06g01342 . . Cpe08g00138 . Bhi01g01110 . . . Hepe05g1357 . Lcy11g1319 . . . . . . . . . . . Lsi05g01401 . . Cme06g00818 . . . . . . Bma02g00943 . . Cmo06g01573 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011276 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00943 Bma_Chr02 FPKM 3.435115 3.221572 2.908352 2.819889 1.129454 1.291484 0.748904 0.0 0.0 0.0