Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00945 ATGTACAACGAAGGAGTTCCTGACTTTGTTGCTGATCAGGGAATGTACTATCCTTCTGCCACCAACTTTGGATATTACTGTACAGGGTATGAATCACCCGGAGAATGGGAGGACCACCATAGGGTTTTTGGTATAGATGGTCCTGATGCCCAGTACACGGGTGCACAAAATGAATTTTTGTCTTATGTATATTATACACCTAACTATGGATATGCACAGTCTCAATACAACCCATACAATCCTTACATACCTGGCGCTATGATGGGAGTTGATGGCCCATTTGTAGGAGCCCAACCATACTATCCCATATCGTATCAAAATTCTGTCTCTTCACCTGCTTATGTACCTATTGCTGTTCAGCCAGATATTGTTCCAATTAATTCACCTGAAACCTTCATGAATGTACCAGTCATTAAATCAAATGAACGAGGGTCCAAAACTGTAAGTTCTGGCGTCAATGCAAGCGGTCAATTCTGTGGTGTTGCAGAGATTACTGGCCCAGTTGATTTCAACAAGGATATGGATTTTTGGCAGCAGGACAAATGGAGTGGAAGCTTTCCAGTCAAGTGGCACATCATTAAAGACGTATCGAACACCAACTTTAGGCACATCATATTAGAGAATAATGAAAACAAGCCAGTGACTAATAGCAGAGATACACAAGAGATCTCTTTCAAGAAAGGCCTGGAGATGTTGAAAATATTTAAAAATCACACATTGAAGACTTCTTTACTTGACGACTTCATGTACTATGAAAATCGACAGAAACTCATGCTGGATGAAAAAGCCAGATTACGCATTCGAAGCATGCACGGCCCATTTTTTCCACCTGTCATGGATCCACCACGCAAGCTTAATTCTGTTGCAGAGTTCGCCCAGACTGAATCTAAGAAGCTTGATGAGCTCATTGATGATCTAAGTCAAGTAAAAATAGGTTCAGTTCCAAGTTCTGAACTGATTAATTCTACAAAGGAAAATGGCAAGGTTGTAGTAAAAGAAACCAAAGGGGATGCCACTTCTACTTCAACTGTTGGTTCGAGGAGTGCCGGGCAGGAGCAGGTTGAGTCTAGATCATCTACTGCTTCTGTTCCTCATAAATATACAGATGTGGTTACAGTCGGTTCAATGCCTGTAAAAGTAAACGGCTTTTCCAAAACATCTCCTATTCTGACCGTCGGAACAATTCCTCTTGATCCCAGAGCACTGCAGCTGTACAACAAGGATACAAATTCGAAAACCTGA 1242 41.55 MYNEGVPDFVADQGMYYPSATNFGYYCTGYESPGEWEDHHRVFGIDGPDAQYTGAQNEFLSYVYYTPNYGYAQSQYNPYNPYIPGAMMGVDGPFVGAQPYYPISYQNSVSSPAYVPIAVQPDIVPINSPETFMNVPVIKSNERGSKTVSSGVNASGQFCGVAEITGPVDFNKDMDFWQQDKWSGSFPVKWHIIKDVSNTNFRHIILENNENKPVTNSRDTQEISFKKGLEMLKIFKNHTLKTSLLDDFMYYENRQKLMLDEKARLRIRSMHGPFFPPVMDPPRKLNSVAEFAQTESKKLDELIDDLSQVKIGSVPSSELINSTKENGKVVVKETKGDATSTSTVGSRSAGQEQVESRSSTASVPHKYTDVVTVGSMPVKVNGFSKTSPILTVGTIPLDPRALQLYNKDTNSKT 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49332303 49335032 - Bma015739.2 Bma02g00945 78195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00945 413 Gene3D ph1033 like domains 148 250 - -
Bma02g00945 413 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 138 IPR045168 -
Bma02g00945 413 MobiDBLite consensus disorder prediction 335 362 - -
Bma02g00945 413 PANTHER OS03G0317000 PROTEIN 1 138 - -
Bma02g00945 413 Pfam YT521-B-like domain 151 236 IPR007275 GO:0003723
Bma02g00945 413 PANTHER OS03G0317000 PROTEIN 151 399 - -
Bma02g00945 413 ProSiteProfiles YTH domain profile. 102 235 IPR007275 GO:0003723
Bma02g00945 413 MobiDBLite consensus disorder prediction 334 362 - -
Bma02g00945 413 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 151 399 IPR045168 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00945 K20102 YTHDF; YTH domain-containing family protein - vvi:100854837 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00945 Bma-Chr2:49332303 Bma11g00794 Bma-Chr11:23165670 6.26E-51 dispersed
Bma02g00945 Bma-Chr2:49332303 Bma06g01453 Bma-Chr6:51219940 1.56E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g227 . . . . . Bpe14g01080 . . . . . . . . . . . . . . . . . . Cla06g00400 Cam06g0422 Cec06g0429 Cco06g0429 Clacu06g0408 Cmu06g0408 Cre06g1188 Cone14ag0687 Cone15ag0700 . . . . . . . . . . . . Bma02g00945 . Sed08g1182 . . . . . . Cpe12g00344 . Bhi12g01981 Tan06g2807 Cmetu02g1103 . . . Lcy12g0894 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004548 2 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00945 Bma_Chr02 FPKM 11.774481 12.619018 0.986169 0.945941 8.171603 8.519059 7.822703 0.0 0.0 0.0