Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00946 ATGGCTGAGCCTACATCCGCCGCCCTAGGTCCGCGCTATGCACCTGATGATCCTACACTTCCTAAGCCTTGGAAGGGTTTAATTGATGGAAGCACAGGCCTGTCATACTATTGGAACCCTGAAACAAACGTCACCCAGTATGAAAAGCCAGTAGCCACAACACCCCCTATGCCGCTTGCTCCAATTCCAGGGGGACATTCAGTGCTGTCTAATGGTGTTACGGCTCAGATTGGGCAGCAAATCTCACAAGGCTCACAACACGAAGGTCAGCAAATGAGTCATTTATCTCAGCATCCATACCCAGTGGCACAGCAACATATTTCTGTGGCGGTGCAGGTGTCACCCCAGGAAGGGTTGCAAATCACCCAAGCATTACAACATCATGGCCTGCATTCAAGTCAGGCCATGCACCAGCCGGGGCAATTACAGCAACATAAGCAACACATGATGCAGTATCAGGGCCAACAAACGTTACAAAATACAAATCAGCATATGTCTCAGCCACCAAATCTGCAAGCTCTACAACATCCTGGGCAAATAATTTCACAACAACCAGCCCCTCAAATTCCCCACAAGATTTCCCCTAGTCAAGGTTTACCAATGGGACAACATCAAGGGCAGTATGCACATCAACAATTTCAATACATGGCCTATCAGTCCAATGCGGTACCTAAAATTCAGCAAAATTCACAGCAGCAGGTCCATCATAATGTCCAAGGGCAGCCGTTTGCAAATCAACAAGAGTATTTGACTACGAACTCAAAGAAGGAGGAAGATGATTTTCAGCATGGAAACCAAGTGGTATTTTCGCCTTCCCAGTTCCAGCAAACTGGCATCTCATCTGCTAACAACGTTCATGCTGGAACGAATTCAATTCCCATGCAAAAGTTTGGTGCTCCATCAGGTCAAGCCCCAAAATTTGGTGTTCCACCAGCTGGCGTGCAGCAGACACCTCCAATGGCTCAGTTACAGGCAACTGGTTTGGATTTTAGGCCCCAACATCTTTCAAAGTTTCAGAATCAGATGAATCCAGCTTTAATGCACGGCCAGCAGGCTGGTGTACCTCCTAATGACATGAAAATGGAAAACGAAGTAAATATGTCGGCAAGAGTTGGAAATGAATATTATGCCAGCGGTAACAAGGATGTGCCTGCTGTTTCTATGCAGCAACCAAAGCTTGCAACCATACCAATGGGAAGGAGTCATCAGGAGATGAGAATGAGTGGAGTTCCGTTTCAGAATACGATGCCTGGTCAATCCAGTGGTTTGAATGCTGTAGCTGGATATTCCTTGCAGAATGTTTACAGTCAGGGTATGGGTGGTCAACCATTACCGAATAACTCTCAAATGAGGCTTCCTATTGGATCTTCAGATGTTACAATTATGTCGCCTGTTGAAAATTACTGCAAACAACATGAAGTTACTACAACGGGTGATAATGTTCCAGCACCATTTATAACATTTGAAGCTACTGGTTTCCCTCCAGAAATATTGAAAGAGATCTATTCTGCTGGTTTCTCCTCTCCAACACCGATTCAGGCACAAACATGGCCAATTGCCCTACAAGGTCGAGATATTTTAGCAATTGCTAAAACAGGATCAGGGAAAACATTGGGCTATTTGATTCCTGCTTTTATTCTTCTAAGGCAACGCCATAATAATCCTCAAAATGGACCAACAGTGCTAGTACTGTCTCCTACTCGGGAGCTTGCCACACAAATACAAGATGAGGCCATCAAGTTTGGTCGATCTTCAAGGGTCTCTTGCACTTGCTTGTATGGTGGAGCTCCAAAGGGTCCTCAGCTAAAAGAATTAGACAGAGGTGCAGATATTGTGGTGGCAACTCCTGGCAGGCTCAATGACATTCTTGAAATGAAAATGATAAATTTTAGACAAATTTCGCTGCTTGTGCTTGACGAAGCAGATCGCATGCTTGACATGGGGTTTGAACCTCAAATTCGTAAAATTGTGAATGAGATACCCCCTCGTAGGCAAACTCTTATGTATACAGCAACCTGGCCAAAAGAAGTTAGGAAAATAGCGGGTGATCTTCTTGTCAATCCTGTCCAGGTTAATATTGGCAGTGTCGATGAGCTTGCTGCAAACAAGGCCATCACACAGTTTGTTGAAATGGTTCCACAGATGGAAAAGCAGAATCGCTTGGAGCAGATCCTACGATCTCAGGAACGAGGCTCCAAGGTTATTATTTTCTGTTCCACGAAAAGATTGTGTGATCATCTTGCACGAAGCCTTGGACGCTCATTTGGAGCTGCTGCTATTCATGGAGACAAGTCTCAGGGGGAGAGAGACTGGGTATTAAATCAGTTTCGCAATGGAAAGTCTCCCATATTAGTTGCTACTGACGTAGCTGCCCGTGGTCTTGATATCAAGGATATAAGAGTAGTGATCAACTATGACTTTCCCACTGGAATTGAGGACTATGTTCACCGAATTGGAAGAACTGGACGAGCTGGTGCTACAGGAATGTCTTATACCTTTTTCTCTGACCAGGACTGGAAATATGCCGCCGACTTAATTAAAGTACTTGAAGGGGCTAACCAACAAGTGCCCCCAGAGGTAAGAGAAATAGCTATGCGTGGTGGACCCAGTTTTGGAAAAGATCGTGGAGGTATGAACCGTTTTGATCCTAGTAGTGGTGGTGGCCGTTGGGATTCTACTGGCCGTGGCAGAATGAGAGATGGTGGTTTTGGTGGCCGTGGTGGGATGAGGGATGGCGGTTTTAGTGGCCGTGGTGGCATGAGGGATGGCTTTGGCGATCGTGGCGGGAGAAATGATTTCTTTCCTGGTCGTGGTAACAGGGGACGTGGTTTTGGCGGTCCTATGGGAGGAGGCCATGTCGGTTGGAGCAGGAATGACAATGGTGGCCCAAACAACCGGTATAACACTATCGATGGACATGGACGAGGCCGAGGCCGAGGCCGTGCGCAAGGTCGATTTGACAACAGAAGAGACATTTCTGATAGGAGCAGGGGCAGAAGTTACAGCCGTAGTCCTGAAAGAGTTCGAACATGGGGTTACAGTAGAAGTCGTAGTAGCAGCCGCAGCCGCAGCCGCAGTAGGAGCTGGAGTAGGAGCCGGAGCCGGAGTCGAAGCCGCAGCCGCAGCCGCAGCCGCAGCTGGTCTAGAGGTCATACCCGCAGCCGAAGCCGAAGCCTTGAGAGGCCTCACGCTCAAAACATTGATAAAGAGAATAGTAAATCTCCAAAACTTGGAACCACATCTGAATCTGCTATGTTTACCAAGCCTCCTGTCAAGGACGGTAACGCAGTCTTAGAAACCAGTGATATGGGTCAGCTGCCTGTGGTTGAAAGCGCTGTGCCTGGCTATCCAGAGACTGCAGTAGACGGTGCTGAAACCGTTATCAATTCTTGA 3393 47.19 MAEPTSAALGPRYAPDDPTLPKPWKGLIDGSTGLSYYWNPETNVTQYEKPVATTPPMPLAPIPGGHSVLSNGVTAQIGQQISQGSQHEGQQMSHLSQHPYPVAQQHISVAVQVSPQEGLQITQALQHHGLHSSQAMHQPGQLQQHKQHMMQYQGQQTLQNTNQHMSQPPNLQALQHPGQIISQQPAPQIPHKISPSQGLPMGQHQGQYAHQQFQYMAYQSNAVPKIQQNSQQQVHHNVQGQPFANQQEYLTTNSKKEEDDFQHGNQVVFSPSQFQQTGISSANNVHAGTNSIPMQKFGAPSGQAPKFGVPPAGVQQTPPMAQLQATGLDFRPQHLSKFQNQMNPALMHGQQAGVPPNDMKMENEVNMSARVGNEYYASGNKDVPAVSMQQPKLATIPMGRSHQEMRMSGVPFQNTMPGQSSGLNAVAGYSLQNVYSQGMGGQPLPNNSQMRLPIGSSDVTIMSPVENYCKQHEVTTTGDNVPAPFITFEATGFPPEILKEIYSAGFSSPTPIQAQTWPIALQGRDILAIAKTGSGKTLGYLIPAFILLRQRHNNPQNGPTVLVLSPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQFVEMVPQMEKQNRLEQILRSQERGSKVIIFCSTKRLCDHLARSLGRSFGAAAIHGDKSQGERDWVLNQFRNGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGMSYTFFSDQDWKYAADLIKVLEGANQQVPPEVREIAMRGGPSFGKDRGGMNRFDPSSGGGRWDSTGRGRMRDGGFGGRGGMRDGGFSGRGGMRDGFGDRGGRNDFFPGRGNRGRGFGGPMGGGHVGWSRNDNGGPNNRYNTIDGHGRGRGRGRAQGRFDNRRDISDRSRGRSYSRSPERVRTWGYSRSRSSSRSRSRSRSWSRSRSRSRSRSRSRSRSWSRGHTRSRSRSLERPHAQNIDKENSKSPKLGTTSESAMFTKPPVKDGNAVLETSDMGQLPVVESAVPGYPETAVDGAETVINS 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49337514 49343982 - Bma015740.1 Bma02g00946 78196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00946 1130 MobiDBLite consensus disorder prediction 185 206 - -
Bma02g00946 1130 SMART helicmild6 741 825 IPR001650 -
Bma02g00946 1130 MobiDBLite consensus disorder prediction 867 1099 - -
Bma02g00946 1130 MobiDBLite consensus disorder prediction 972 1004 - -
Bma02g00946 1130 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 279 945 - -
Bma02g00946 1130 SUPERFAMILY WW domain 11 52 IPR036020 GO:0005515
Bma02g00946 1130 Pfam WW domain 20 50 IPR001202 GO:0005515
Bma02g00946 1130 MobiDBLite consensus disorder prediction 1020 1052 - -
Bma02g00946 1130 MobiDBLite consensus disorder prediction 1053 1070 - -
Bma02g00946 1130 Pfam Helicase conserved C-terminal domain 717 825 IPR001650 -
Bma02g00946 1130 CDD WW 21 51 IPR001202 GO:0005515
Bma02g00946 1130 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 637 645 IPR000629 -
Bma02g00946 1130 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 517 691 IPR014001 -
Bma02g00946 1130 MobiDBLite consensus disorder prediction 1 21 - -
Bma02g00946 1130 CDD SF2_C_DEAD 705 834 - -
Bma02g00946 1130 Gene3D - 460 695 IPR027417 -
Bma02g00946 1130 Pfam DEAD/DEAH box helicase 510 680 IPR011545 GO:0003676|GO:0005524
Bma02g00946 1130 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Bma02g00946 1130 Gene3D - 696 866 IPR027417 -
Bma02g00946 1130 MobiDBLite consensus disorder prediction 1071 1086 - -
Bma02g00946 1130 SMART ultradead3 505 708 IPR014001 -
Bma02g00946 1130 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 720 864 IPR001650 -
Bma02g00946 1130 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 486 514 IPR014014 GO:0003724
Bma02g00946 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 842 IPR027417 -
Bma02g00946 1130 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Bma02g00946 1130 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 279 945 - -
Bma02g00946 1130 SMART ww_5 19 52 IPR001202 GO:0005515
Bma02g00946 1130 Gene3D - 14 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00946 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - jre:109001168 1219.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00971 Bma-Chr1:9581021 Bma02g00946 Bma-Chr2:49337514 2.39E-138 dispersed
Bma02g00286 Bma-Chr2:3318575 Bma02g00946 Bma-Chr2:49337514 1.24E-64 dispersed
Bma02g00946 Bma-Chr2:49337514 Bma10g00759 Bma-Chr10:12145932 6.71E-156 dispersed
Bma14g00193 Bma-Chr14:2461588 Bma02g00946 Bma-Chr2:49337514 4.38E-76 dispersed
Bma02g00946 Bma-Chr2:49337514 Bma07g00227 Bma-Chr7:2674517 2.94E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g229 . . . . . Bpe14g01079 . . . . . . Car06g01343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00946 . . Cmo06g01576 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00946 Bma_Chr02 FPKM 0.926307 1.024198 2.663777 1.959308 0.75699 0.953875 0.786396 8.661297 7.921258 8.603317