Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00953 ATGGCGGGTCGGGGTTGTTTCTGTTTCGAGTGCCTCGATCGGCGAATTATGTCTGATTTCGCTGGCAGATTCGCCGTCTCCTATGCCGTAGCCGACTCTGCTCTCCCCCTCGCCTCCTCCGCCGTCGTTCAGATTTCTAACTCTGACGGGGACACTTCGATGACGACAACATCTGGTTTTATGCTGGTCTATCGCCCTGCCGATGATGATGATTGCTTGAACAGTTACATAAATGAGTGCACGCGGGAAAGTATGGAAGATGATGGAGTTAATATTAATATCTTTTTGGATTCAAGTCAAGATCAAGTCAAGGTTACTGTTCATCTTCCTGATGGTAAAATTAATTGCTCAAATATTTCATCAGTTGATTATCGATGCTCCAAATATTTTGGAAGAGGAATGACAACTTCATGTAACCATTTTGGCTATTCCTCGTGTTCGAGGACAGTGACATCATTGGCTCCAATCGCTTATGTTGGTATTTCATCATTATCTAATTTAGAAGAGCTTGCATCAAACTTATTGTCTGGTTCTCTGGAAGATCACGTGTTGGGCTCACTTAGTCTATTAATCGAAGGGAAAGCCTCAAGTAGAGATAGTGTAAATTTCCTTAGGTTACTTGGATTCCCATCATTTGAGGATAATAATTTCCTGGGATCCTTAAGGCATCCCAACATAGTTCCTATTCTTGCGATGTTGAAAGCATCCAATTTTAATACTTTGGTGTTACCGACAACTCCATATACCTTAGAAAGCATTCTTTACTATAGTCCAAATGCGATGAAATCTGAGTGGCATATAAAGTTTTTATTGTATCAGCTACTCTCAGCCTTAACATACCTACATGGTTTGGGGATCAGCCATGGAAATATTTGCCCATCCAGTGTGATGTTGACTGATTCAGGCTGGTCTTGGCTACGGATTTACGAAGATACTAAGCTTCATTCAAAATTGTGTACGAGTAATAGCAAAAATGTTATGGGTACACATGAACAGATTGGATGTTGCACAGATGGTTGTCCTAGTACTGGTCTATTTTCTAATCTAAAGCTTTCTCTCGCTGTAAATTGGAAATGTTATTTCTATCAGTGGTGGAGGGGTGAATTGAGTAATTTTGAATATTTACTTGTATTGAATAGATTAGCCGGACGAAGGTGGGGTGACCGTACATTTCATACAGTTATGCCATGGGTAATAGATTTTAGCATTGAACCTGAAATGAATTCTGATATAGGATGGCGGAACTTAAGCAAGAGTAAATGGCGGTTGGCAAAAGGTGATGAACAGTTAGACTTTACGTACTTGACATCTGAAATCCCGCATCATGTGTCAGATGAATGTCTTTCAGAGCTAGCTGTCTGCAGCTACAAAGCTAGGAGATTACCTTTGAGTGTTCTTCGTACTGCTGTTCGTTCAGTCTATGAACCTAATGAGTATCCTTCTACCATGCAAAGACTGTATCAATGGACGCCCGATGAATGCATTCCTGAGTTTTATTGTGATCCCAAAATATTTTACTCTCTGCATGATGGCATGCCTGATTTGGCTGTACCTTCATGGGCAGGTTCTCCTGAACAATTCATTGAAATGCATCGGGAGGCTTTAGAGAGTGATCGGGTTTCTTGCAAACTACATCAGTGGATTGACATTACCTTTGGGTACAAAATGTCTGGTGAAGCAGCCATTGCTGCGAAGAATGTTATGCTACCTTCATCGGTGACTACTCTTCCTAAATCTGTAGGTCGGCGACAACTTTTTAATCGGCCACATCCAAAACGTCAACTTACTTGTAGAAAGGCTTGTGAAGGGACCAATGATCAAAGTCATTTGACAGAGGTTGAGAAATCTCATCATTTTGAAATGGCTTATTTACAAGAACTTGAAGAAGCATCTGCATTTGTTGAACATGCTAGGCATTTAGATGCTTTCTATGGCTGCTACGCAGAGAAACCCGTGAAAGACATCTCTTCGGAAGAAGAAGTATCAATTGAGAGTGTTGAAAAGAGCACTAATAACCCTTGTGACTTTAGCACAAAGCATCAGCAACAAGCGGACATTGATGTGAAGTATCTCCTTGAGCACGTTGAGGTAGACGATGAAGGTTCTCTGGACTACCAAGAACTATTATTATGGAAGTGCAGATTACCCTTTTCATCCAATTGTTCAGAGAATATTGCTTGGGACATTTTTTCTTTTGGTTGTCTTTTTTCTGAGCTTTATTTGAAGAGACCACTTTTTGATTCAACTACGTTGTCTATGTATTTGGAGAGTGGTATTTTACCTGGATTGATTGAAGAACTTCCTGCTCACGTGAAATTACTTGTTGAAGCATGCATTCATCAGGATTGGACAAGGTGGCCATCAGCTAAAAATCTTTTGGAGTCACCTTTTTTTCCTGCCACAATCAAGTCTTGTTACTTGTTTCTTTCTCCACTTCAGCTTCTTGCTAAAGATGGAACCCGCCTTTGTTATGCTGCGAATTTTGCTAAACAAGGAGTCTTGAAGGCAATGGGAAGTTTTGCAGCAGAAATGTGTGCTCCCTACTGCTTGCCTCTTGTACTGTCTCCCTTGACAGACGATGAGGCTGAATGGGCTTACATGCTATTGAAAGAGTTCATCAAGTGTTTGATGCCAACAGCAGTAAAGACTTTGCTTTTACCAGCTATTCAGAATATTCTACAGGCTAGTTATTATTCTCAAAATTATTTTTCGGCAGCTGCTGCTGCTGTGCTGCTAATTGGATCTAGTGAAGAGCTGGGAGCTCCCAAAACCATTAATCAGACGATCTTGCCTCTGATTAACTGCTTTGGGAAAGGACTTTGTTCTGATGGAATTGATGCGCTGGTTAGAATTGGAGGTCTTTTAGGGGAGACTTTCATTGTCAGACACATGCTACCATTACTCAAAAGTGTCGTTAGTTCCTGCATTAATTATTTATCTAAGGTGAAGCCTGAGCCTGTGCAGAGTTGGTGTGCAATGGCAGTTATTGATTGTCTTACCACATTAGATGGGCTGGTAGTATTCTTGCCTAGGAAAATTGTTGCGAAGGAGCTTATTGGAGATCAGAATTTCTTACATGTTGCGGTGCTTATGGAGAAGAATTTTGAAATTCCAGTGCTTCAGGTTGCTGCCAATACTCTCATGGCAGTTTGCCAACGAATTGGACCTGATATGACTGCACTGCACGTTCTTCCACAACTCAAAGAGCTATTCGATGAACTTGCTTTTTCACAGGAAATTACTTATAGGTCAAACTCTCTTGGGAGAAACATGGAAATATCCAAACGAAATATTAATAGGGATGGTCAAATTGACAGTCGTATGGACCTTGTGTTTCTTCTCTATCCATCTTTTGCCTCTCTTCTTGGCATTGAAAAACTCCGCCAATGTTGTGCAACGTGGTTGCTTCTAGAGCAATATCTTTTTCGGTTCCATAGTTGGAAGTGGGAATATACAGGGGAGTCATCTCGTAATGGTTCAGAAAATGTAATCACAAAGAAGGATGTACTCAGGAAGAGTTCTACCTGTGAGTACAATCCTGCCAAGCTTTTGTTGAATGGTGTTGGTTGGTCAATTCCTCAATCACAAGGGGCAAAAAGTGCCAAAAATTTGATGCCTCAGAGAAGGCTTTCTGATGCTTCTCAAGGTCCAATTGCATTGAATTTGCCATCCACAAACTTTTTGGCTAGCGAGGCCTGGTTTTGGTATCCTAGTCCAGCCGTTAGCTGGGATGGACCTGAGTTTCCTGGGCGTGCAGGGGGTCTTAAAGATGAACCTATGTGGAAGATTAAAGCATCTGTCATACACTCAGTCCGTGCTCATCATGGCGCATTAAGATCCTTGGCTGTTGGCCCAGATGAGCAAACCATTTACACTGCAGGGAGTGGACCAGGATTCAAAGGAACTGTCCAGAAGTGGGAACTAACGAGCATTAACTGTGTATCTGACTATTGTGGCCACGAGGAGGTTGTCAATGACATTTGTGTTTTGGCATCTAGTGGAAGAGTAGCATCTTGTGATGGAACCTTGCATGTATGGAATAGCCAAACTGGAAAGCTAATATCAATATTTGCGGAGTCATCTGTGGATTCTGCACACCTTATGATCTCTTTATCTTCAGTGTTAAAGATAAATGCCGATCAGACAAATATGATAGGTCCCAACTCTCTATCTAGCGGAATTCTCACAAGTACATTTGATGGGAGCCTTTATACTTGTATGAATCAGTTAGGTCTGTCGGAAACTCTTGTAGTGGGTACTGGAAATGGTTCTCTTAGGTTTATTGATGTTGCTCGAGGTCAAAAGCTTCATTTGTGGAGAGGGGATTCAGTTGATTCCAATTTTCCTTCTCTTGTCTCTGCCTTGTGCTCCTCTGGATCTGACAAGATGAGTACTGAAGGTGGCTCTGCCTTGTCATCCTGGATTGCATCTGGACTAAGTTCTGGACGCTGTAGGTTATTTGATGCAAGGAGTGGTAAAGTTATTGCCTCTTGGCGAGCTCACGACGGATATGTGACACAGTTAGCAGCCCCTGAAGACTACTTGCTCGTTTCCAGCTCTCTTGACAGGACATTGCGAGTCTGGGACCTGCGAAGGAATTTGCCGTCAAAGCCAATTGTATATAAAGGCCACAGCGATGGCATTTCTGGTTTCTCCCTGTGGGGCCAAGATGTTATTTCCATTTCCAGAAATAAGATCGGAGTTACCTCTTTGTCAAAACACGCCAGCGAGGAAGGGTACTATCGAGTTGTACCTCGAAAACTCTATCTTGCAGATCAAGGAACAAGAAATCTTTCGGTGTTAACGTGTGTAAACATATTACCTTACTCAAGGTTGTTTGTCGTTGGAACAGAGGATGGCTATTTGAGAATTTGTTGTTAG 4881 41.92 MAGRGCFCFECLDRRIMSDFAGRFAVSYAVADSALPLASSAVVQISNSDGDTSMTTTSGFMLVYRPADDDDCLNSYINECTRESMEDDGVNINIFLDSSQDQVKVTVHLPDGKINCSNISSVDYRCSKYFGRGMTTSCNHFGYSSCSRTVTSLAPIAYVGISSLSNLEELASNLLSGSLEDHVLGSLSLLIEGKASSRDSVNFLRLLGFPSFEDNNFLGSLRHPNIVPILAMLKASNFNTLVLPTTPYTLESILYYSPNAMKSEWHIKFLLYQLLSALTYLHGLGISHGNICPSSVMLTDSGWSWLRIYEDTKLHSKLCTSNSKNVMGTHEQIGCCTDGCPSTGLFSNLKLSLAVNWKCYFYQWWRGELSNFEYLLVLNRLAGRRWGDRTFHTVMPWVIDFSIEPEMNSDIGWRNLSKSKWRLAKGDEQLDFTYLTSEIPHHVSDECLSELAVCSYKARRLPLSVLRTAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDPKIFYSLHDGMPDLAVPSWAGSPEQFIEMHREALESDRVSCKLHQWIDITFGYKMSGEAAIAAKNVMLPSSVTTLPKSVGRRQLFNRPHPKRQLTCRKACEGTNDQSHLTEVEKSHHFEMAYLQELEEASAFVEHARHLDAFYGCYAEKPVKDISSEEEVSIESVEKSTNNPCDFSTKHQQQADIDVKYLLEHVEVDDEGSLDYQELLLWKCRLPFSSNCSENIAWDIFSFGCLFSELYLKRPLFDSTTLSMYLESGILPGLIEELPAHVKLLVEACIHQDWTRWPSAKNLLESPFFPATIKSCYLFLSPLQLLAKDGTRLCYAANFAKQGVLKAMGSFAAEMCAPYCLPLVLSPLTDDEAEWAYMLLKEFIKCLMPTAVKTLLLPAIQNILQASYYSQNYFSAAAAAVLLIGSSEELGAPKTINQTILPLINCFGKGLCSDGIDALVRIGGLLGETFIVRHMLPLLKSVVSSCINYLSKVKPEPVQSWCAMAVIDCLTTLDGLVVFLPRKIVAKELIGDQNFLHVAVLMEKNFEIPVLQVAANTLMAVCQRIGPDMTALHVLPQLKELFDELAFSQEITYRSNSLGRNMEISKRNINRDGQIDSRMDLVFLLYPSFASLLGIEKLRQCCATWLLLEQYLFRFHSWKWEYTGESSRNGSENVITKKDVLRKSSTCEYNPAKLLLNGVGWSIPQSQGAKSAKNLMPQRRLSDASQGPIALNLPSTNFLASEAWFWYPSPAVSWDGPEFPGRAGGLKDEPMWKIKASVIHSVRAHHGALRSLAVGPDEQTIYTAGSGPGFKGTVQKWELTSINCVSDYCGHEEVVNDICVLASSGRVASCDGTLHVWNSQTGKLISIFAESSVDSAHLMISLSSVLKINADQTNMIGPNSLSSGILTSTFDGSLYTCMNQLGLSETLVVGTGNGSLRFIDVARGQKLHLWRGDSVDSNFPSLVSALCSSGSDKMSTEGGSALSSWIASGLSSGRCRLFDARSGKVIASWRAHDGYVTQLAAPEDYLLVSSSLDRTLRVWDLRRNLPSKPIVYKGHSDGISGFSLWGQDVISISRNKIGVTSLSKHASEEGYYRVVPRKLYLADQGTRNLSVLTCVNILPYSRLFVVGTEDGYLRICC 1626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49543564 49551185 + Bma015750.1 Bma02g00953 78203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00953 1626 Gene3D Transferase(Phosphotransferase) domain 1 213 333 - -
Bma02g00953 1626 Gene3D - 1253 1379 IPR015943 GO:0005515
Bma02g00953 1626 Gene3D Transferase(Phosphotransferase) domain 1 714 805 - -
Bma02g00953 1626 ProSiteProfiles BEACH domain profile. 349 620 IPR000409 -
Bma02g00953 1626 SUPERFAMILY Protein kinase-like (PK-like) 724 799 IPR011009 -
Bma02g00953 1626 ProSiteProfiles Trp-Asp (WD) repeats profile. 1498 1531 IPR001680 GO:0005515
Bma02g00953 1626 SUPERFAMILY WD40 repeat-like 1257 1624 IPR036322 GO:0005515
Bma02g00953 1626 SMART WD40_4 1310 1347 IPR001680 GO:0005515
Bma02g00953 1626 SMART WD40_4 1264 1307 IPR001680 GO:0005515
Bma02g00953 1626 SMART WD40_4 1591 1626 IPR001680 GO:0005515
Bma02g00953 1626 SMART WD40_4 1432 1488 IPR001680 GO:0005515
Bma02g00953 1626 SMART WD40_4 1392 1429 IPR001680 GO:0005515
Bma02g00953 1626 SMART WD40_4 1491 1529 IPR001680 GO:0005515
Bma02g00953 1626 CDD Beach 363 593 IPR000409 -
Bma02g00953 1626 Gene3D BEACH domain 354 593 IPR036372 -
Bma02g00953 1626 SUPERFAMILY Protein kinase-like (PK-like) 217 306 IPR011009 -
Bma02g00953 1626 SUPERFAMILY BEACH domain 342 593 IPR036372 -
Bma02g00953 1626 ProSitePatterns Trp-Asp (WD) repeats signature. 1516 1530 IPR019775 -
Bma02g00953 1626 Pfam WD domain, G-beta repeat 1493 1529 IPR001680 GO:0005515
Bma02g00953 1626 Pfam WD domain, G-beta repeat 1312 1347 IPR001680 GO:0005515
Bma02g00953 1626 Gene3D - 1413 1626 IPR015943 GO:0005515
Bma02g00953 1626 CDD PKc 216 302 - -
Bma02g00953 1626 SMART Beach_2 361 593 IPR000409 -
Bma02g00953 1626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1498 1531 - -
Bma02g00953 1626 Pfam Beige/BEACH domain 363 575 IPR000409 -
Bma02g00953 1626 PANTHER GH12955P 7 903 - -
Bma02g00953 1626 PANTHER GH12955P 903 1626 - -
Bma02g00953 1626 SUPERFAMILY ARM repeat 830 1072 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00953 K17601 WDR81; WD repeat-containing protein 81 - qsu:111990260 2187.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00953 Bma-Chr2:49543564 Bma04g00427 Bma-Chr4:3442149 8.99E-25 dispersed
Bma02g00947 Bma-Chr2:49393195 Bma02g00953 Bma-Chr2:49543564 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g238 . . . . . Bpe14g01078 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00237 . . Bma02g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009197 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66363 PF02138 Beach 3.50E-43 No_clan Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00953 Bma_Chr02 FPKM 12.57631 14.70744 8.255359 7.232662 12.386098 13.584273 12.51179 10.013114 9.395489 10.459583