Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00954 GTAGGCAACAATGGCGGATATTTCCCCAGAGCAACAGGTCCAAACAATTTACAGACTGTAAATATCCAACCTATTTTGATACCAGCCATTCCAGTGGAAGAATTGAGAGCGATGACCGATAATTTTAGCGACAAGTCTATGATTGGTGAGGGATCATATGGAAGCATATATTTTGGTGTTCTTAAAAGTGGGCAGACTGCAGCCATAAAAAAACTGGAGTCTAGCAGGCAACCAGAACAAGAATTTCTAGCTCAGGTGTCTATGGTGTCAAGACTAGAAAATGAAAATGTTGTGAAGCTTATTGGCTATTGTAATGATGGGCCAATCCGCGCCCTTGCTTATGAGCATGCTTCGCAAGGGTCTCTTCATGATATTCTCCATGGTAAAAAAATGGATGTTTTTTATGAAATAGGAAAGAAAGGAGTCAAAGGAGCACAACCCGGCCCGCTTCTGTTGTGGACTCAAAGAGTAAAAATTGCATTAGGAGCTGCAAAAGGACTAGAATACCTGCACGAGCGGGCACAACCTCAAATAATTCATCGTGATATTAAGTCGAGTAATATTCTTGTTTTTGACGACAACGAAGCTAAGATTGCTGATTTTGATCTGTCAAATCAAGCTCCGGATAATGCAGCCCGGCTTCATTCAACTCGTGTCCTCGGGACATTTGGTTATCATGCTCCTGAATATGCAATGACTGGGCAACTGAGCACGAAAAGTGATGTTTACAGCTTCGGCGTCATTCTTCTTGAACTCTTGACCGGTCGTAAGCCCGTTGATCATACACTTCCTCGTGGTCAACAAAGCCTCGTTACATGGGCGACGCCAAAACTCGTCGAAGATAAGGTTAAGCATTGTGTCGATGCTCGGCTCAGGGAGAATTACCCCCCCAAGTCTGTGGCCAAGTTTGCTTCTGTTGCTGCCCTGTGTGTGCAATATGAAGCCAATCTCCGGCCGAGTATGAACATTGTCGTGAAAGCACTCGAACCTTTATTGAACACTCGTCCTGCTCCTCAATCGAGACGTCCAAACGATATTGTCTCTGCCTAA 1050 44.38 VGNNGGYFPRATGPNNLQTVNIQPILIPAIPVEELRAMTDNFSDKSMIGEGSYGSIYFGVLKSGQTAAIKKLESSRQPEQEFLAQVSMVSRLENENVVKLIGYCNDGPIRALAYEHASQGSLHDILHGKKMDVFYEIGKKGVKGAQPGPLLLWTQRVKIALGAAKGLEYLHERAQPQIIHRDIKSSNILVFDDNEAKIADFDLSNQAPDNAARLHSTRVLGTFGYHAPEYAMTGQLSTKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLVEDKVKHCVDARLRENYPPKSVAKFASVAALCVQYEANLRPSMNIVVKALEPLLNTRPAPQSRRPNDIVSA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49575252 49577187 + Bma015752.1 Bma02g00954 78204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00954 349 SUPERFAMILY Protein kinase-like (PK-like) 15 328 IPR011009 -
Bma02g00954 349 SMART serkin_6 42 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00954 349 ProSiteProfiles Protein kinase domain profile. 42 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00954 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Bma02g00954 349 Pfam Protein tyrosine and serine/threonine kinase 46 328 IPR001245 GO:0004672|GO:0006468
Bma02g00954 349 Gene3D Transferase(Phosphotransferase) domain 1 118 346 - -
Bma02g00954 349 Gene3D Phosphorylase Kinase; domain 1 10 116 - -
Bma02g00954 349 PIRSF ILK 18 341 - -
Bma02g00954 349 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 338 - -
Bma02g00954 349 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 338 - -
Bma02g00954 349 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Bma02g00954 349 CDD STKc_IRAK 48 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00954 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - qsu:111997733 523.472
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00954 Bma05g01241 CCT
Bma02g00954 Bma06g01451 BCT
Bma02g00954 Bma06g01427 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00954 Bma-Chr2:49575252 Bma09g00825 Bma-Chr9:47108775 1.97E-171 dispersed
Bma02g00954 Bma-Chr2:49575252 Bma06g01451 Bma-Chr6:51205616 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g252 . . . . . Bpe14g01077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00096 Bda11g00468 . . Bpe13g00731 Bma02g00954 Bma06g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66364 PF07714 PK_Tyr_Ser-Thr 4.70E-44 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00954 Bma_Chr02 FPKM 7.470998 9.282471 18.663231 17.325188 2.353388 3.337913 2.879873 3.501763 2.493084 2.452929