Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00962 ATGGAACACCCCTCTTCATCTAAGGAAAAAGGGATGGGTCGTTGGGATACTTCAAGGGGGCAATTGGAAAGCTTCATGCCACTGGATGGGGGCATGGGGGATCTCAGCTTTGAGGATGTCTATGGCAACTTCGCCAACCTACCGACTCTTGATGCTACTGCTGGATGGTGCTACAGTTCAGCTGTAGATCCTATTTTTCCTTCTGGGTTGTCTTTGGTTCCATCAATGCCTTGTACATCTTTGGATCCTTCAAATTTTGTGGAAGATAATAGCGAGGCGTTCTCCATGAATGAAATCAGTGGTGTTACCAATTCCATGGGGAGTTCGTTCAATTGTGGGGACAAGGGTCTGTTTCATCAACTGGAATCCGTATTCCGATTTGCAATAGATTCAAGTGATGTAAATGAGTCGGAATCTAAACAAAATAATGTTATGGACACTGGTAGTTATATTATCTCTAGGCCTTTTGGATGGTCCCTTGATGAAAGAATGCTTAGGGCATTGGCCTTATTCAAGGAATCTTCTGGTGAGGGTATCTTGGCTCAAGTATGGGTTCCTGTGAAGCATGGGAATCAATATGTTTTGACAACTAGTGAGCAACCTTATTTGCTCGATCAAATGCTGACGGGGTTTCGTGAAGTTTCTAGAATGTTCACATTTTCTACAGAAGAGAAACCAGGTGCAGTCCTTGGTCTTCCTGGTCGGGTGTTTGCTTCTAAAATTCCAGAGTGGACTTCTAATGTTAGTTACTACAAAAAGGGAGAATATCTCCGTGTGGAGCATGCTCTTGGCCATGACGTTCGAGGATCAATTGCATTACCAGTTTTCGATTTCCAATCTGAAATGTCATGTTGTGCGGTACTTGAACTTGTGACTAATAAAGAAAAACCCAATTTTGACATGGAAATGGAAGTAGTCTGTCAAGCACTCCAGGCCGTTAATTTGAGGACAACTCCGCCACCACGACTTCTCCCCCATAGCCTTACAAATAATCAGAAATCTGCGTTGGCTGAAATAACCGATGTCCTACGAGCCGTATGCCATGCACATAGACTGCCTCTAGCGCTTGCATGGATACCCTGCTGTTATACCACGGGAGCGGATGATGGATCTACAAGAGTCCACGTTAGAGATAGTACTATCGGACCCCACGAAAAATGTATCATATGCATCGAAGAATCGGCTTGTTATGTAAATGATAAAACCATGCAAGATTTTTTGGATGTCTGCACCAACCATTATCTAGAGGAAGGACAAGGGATTGTTGGGAAAGCCCTTCAGTCGAATCATCCCTTTTTTAATCCTGATGTGCAGGCTTATGATATAAATGAATATCCACTTGTCCATCATGTCCGGAAGTTTGGTTTGAATGCTGCAGTTGCAATCCGGCTCAGAAGCACTTATACGGGTGTTGATGACTATATTTTAGAGTTGTTTTTACCTGTCAATATGACGGGGAGTACGGAACAGCAACTCCTGTTGAACAGCCTCTCTGGGACCATGCAGAGGATATGTAGAAGCTTGAGGACTGTTTCGAATGTAGACTTCGTATGCTCTGAGCATCCTAAAGTTGGATTTCAGGACGAGGCAGTTCAAAAGTTCACTCCTATTTCTTTTAGAATTACGAAATCAAGAACATCAGATACCTTGAGTGCAAAGGAGAAACTGAAGTTGTCGAAGTCGGCCAATGACGAAGTTGAAACAAGCTGTCCTTCTGACCTGACAACTAGTGGATCCAAGAGACTATTGGAGAAGAAACGAAGTACAGCTGAGAAAAATGTCAGCTTGAGTGTTCTTCAGCAATACTTTTCTGGAAGTCTTAAGGATGCTGCAAAAAATATTGGCGTTTGTCCCACTACCTTAAAAAGGATATGCAGACAACATGGGATTTCGAGATGGCCATCTCGAAAAATCAACAAGGTGAACCGATCCTTGAGGAAAATACAAACGGTGCTTGATTCTGTTCAGGGGGTGGAGGGAGGATTGAAGTTTGATCCATCTACTGGCGGTTTTATTGCCGCTGGCACTCCGATGGAAGAATTTAACAGGCAAAGTAGTTTTCTTTTGCCTGAGAAAAAGCCGTGTTGTGGAGAAGCACCAGCCTTTAACAATCCAGTTTCTGTCCCTCGAGCGTGTTTTAATGGTCGCAGTTCTTCGATTAAGTTGGAAGACGACGAGTTTCTTATGGCCGGAGACGACATAATACCGTCGATAAGTATTCCGGAAAGGACATCTGACATTCTGCCAGTGGACCTTAGCGGTGACTCCAAGAGTTCGAGCTCATTGGCTGCTGATGAGATGGACACTGGAGGAGAAGCTGATGATGGAGTCGTAGAGCACAACCACCCACTTTCTTCAAGCACGGGGGACTCATCAAGTGGATCTCGTACCCTCCTTCACGGCAGTTCATCGGGCTCTCAAAGCCTTGACGACCAGAAGTATCCGAAAGACAAAATAAGCTGCGACGACAGTGGATCAAAGATCACCATCAAAGCTTCATACGGAGAAGAAATTATTCGATTCAAATTCGATCCGTCTTGGGGTTATTTGCAACTCAATGAAGAAGTGGCCAAGAGGTTTAAATTGCCTAGCGGGTCATTCGAACTCAAGTATCTAGACGACGAAAAAGAGTGGGTAATGCTAGCTTATGATTCGGATTTGCAAGAGTGTCTCGAGCTGATGGAAGATTTCGGGGCAAGAACTGTGAAGTTCCTCGTCCGGGATAGGCCTTTTGCGGTGAGCAGTTCAACCGGTAGCTGCTGCTTTCTCTCTGGAGATTGA 2781 44.48 MEHPSSSKEKGMGRWDTSRGQLESFMPLDGGMGDLSFEDVYGNFANLPTLDATAGWCYSSAVDPIFPSGLSLVPSMPCTSLDPSNFVEDNSEAFSMNEISGVTNSMGSSFNCGDKGLFHQLESVFRFAIDSSDVNESESKQNNVMDTGSYIISRPFGWSLDERMLRALALFKESSGEGILAQVWVPVKHGNQYVLTTSEQPYLLDQMLTGFREVSRMFTFSTEEKPGAVLGLPGRVFASKIPEWTSNVSYYKKGEYLRVEHALGHDVRGSIALPVFDFQSEMSCCAVLELVTNKEKPNFDMEMEVVCQALQAVNLRTTPPPRLLPHSLTNNQKSALAEITDVLRAVCHAHRLPLALAWIPCCYTTGADDGSTRVHVRDSTIGPHEKCIICIEESACYVNDKTMQDFLDVCTNHYLEEGQGIVGKALQSNHPFFNPDVQAYDINEYPLVHHVRKFGLNAAVAIRLRSTYTGVDDYILELFLPVNMTGSTEQQLLLNSLSGTMQRICRSLRTVSNVDFVCSEHPKVGFQDEAVQKFTPISFRITKSRTSDTLSAKEKLKLSKSANDEVETSCPSDLTTSGSKRLLEKKRSTAEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRKIQTVLDSVQGVEGGLKFDPSTGGFIAAGTPMEEFNRQSSFLLPEKKPCCGEAPAFNNPVSVPRACFNGRSSSIKLEDDEFLMAGDDIIPSISIPERTSDILPVDLSGDSKSSSSLAADEMDTGGEADDGVVEHNHPLSSSTGDSSSGSRTLLHGSSSGSQSLDDQKYPKDKISCDDSGSKITIKASYGEEIIRFKFDPSWGYLQLNEEVAKRFKLPSGSFELKYLDDEKEWVMLAYDSDLQECLELMEDFGARTVKFLVRDRPFAVSSSTGSCCFLSGD 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49645563 49651138 - Bma015759.2 Bma02g00962 78212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00962 926 MobiDBLite consensus disorder prediction 781 810 - -
Bma02g00962 926 SMART PB1_new 827 909 IPR000270 GO:0005515
Bma02g00962 926 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 756 - -
Bma02g00962 926 SUPERFAMILY CAD & PB1 domains 819 908 - -
Bma02g00962 926 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 758 920 - -
Bma02g00962 926 PANTHER PROTEIN NLP8 758 920 IPR045012 GO:0003700
Bma02g00962 926 PANTHER PROTEIN NLP8 7 756 IPR045012 GO:0003700
Bma02g00962 926 MobiDBLite consensus disorder prediction 749 818 - -
Bma02g00962 926 ProSiteProfiles RWP-RK domain profile. 575 661 IPR003035 -
Bma02g00962 926 ProSiteProfiles PB1 domain profile. 827 909 IPR000270 GO:0005515
Bma02g00962 926 Pfam PB1 domain 828 908 IPR000270 GO:0005515
Bma02g00962 926 MobiDBLite consensus disorder prediction 751 765 - -
Bma02g00962 926 Pfam RWP-RK domain 593 641 IPR003035 -
Bma02g00962 926 CDD PB1_NLP 828 908 IPR034891 -
Bma02g00962 926 Gene3D - 823 907 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00962 - - - qsu:112032892 1012.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00962 Bma06g01446 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02411 Bma-Chr1:81688236 Bma02g00962 Bma-Chr2:49645563 2.65E-41 dispersed
Bma02g00962 Bma-Chr2:49645563 Bma05g00891 Bma-Chr5:46706732 1.13E-20 dispersed
Bma02g00962 Bma-Chr2:49645563 Bma06g01446 Bma-Chr6:51167442 5.55E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00891 BCT 175 968 NLP Transcription Factor Family AT1G64530 52.1 9.6e-215 743.4
Bma12g00621 BCT 208 941 NLP Transcription Factor Family AT1G64530 51.3 2.5e-191 665.6
Bma05g00891 BCT 254 968 NLP Transcription Factor Family AT4G24020 54.2 3.1e-197 685.3
Bma12g00621 BCT 287 941 NLP Transcription Factor Family AT4G24020 51.7 6.4e-171 597.8
Bma02g00962 BCT 152 923 NLP Transcription Factor Family AT3G59580 53.0 5.6e-207 718.0
Bma06g01446 BCT 94 227 NLP Transcription Factor Family AT3G59580 65.7 6.3e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56904 PF00564 PB1 2.00E-15 CL0072 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00962 Bma_Chr02 FPKM 27.735399 25.659441 22.071936 22.435753 18.328592 18.924341 18.794348 5.213646 5.445275 6.925278