Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00967 ATGAATACAGACGTGAAAGTTGCAGGGGAGCATAGGTCGTCTCTTTTGCAGGTCGTCAGTATCGTCCCAGCTCTTGCCGGAAGTGAGCTTTTTCCAAACCAAGGTTTTTATCTAAAAGTCTCTGATTCTTCTCACGCCACATACGTTTCACTTCCCGATGAACACGACGATCTAATTCTCAGCGATAAAATCCAATTGGGTCAGTTCATTCACGTCGAACGGCTGGAATCGGCTTCTCCAGTCCCAATTCTTCACGGTTTTCGGCCGATTCCAGGCCGACACCCTTGTGTGGGAAGCCCGGAAGATATTGTCGCGACTCATTCTCTTAATTTTCTCAGTAGTTCTTCTGTGAGTTCTAAGACCGGGGAAAAGGTGAAATCGGGTTCAAAGGAGAAATCTTCAAATCTAAGATTGAACAGGATTAGTGTCAAGGAAGAACAATCCGAGAAGAAAGTGCCGTCTTTTAGTCGATCTAAATCGAATTTATACAAATCTGCACTGAATTTGGACGTCAAAAGGGAATCATTGACTAGACTTAAGTCTTCCAAGTCGATCCCTTCGTCTCCGACGAGTTGTTATTCGTTGCCAAGTTCGTTCGAAAAATTTTCCAGTGGGATCAAGCAACAAGAAGCAAAGATCAAGGGGCCAGAGAAAGGAACAGCTCGGGCGGGGCTACCAGAAAAGTCTGCCTCTGTTCGATCTGCCAGTCCGACTGTAAGGAAAGCTTCGATGGTTAATCCAATAAGAAATTTGGTTCAGGGTATTGAGCTGGGGGCTAAGGCTTTGAGGAAGAGTTGGGAAGGGAATATGGAGGTAAAGAATAAAGATAACTCAAAATTTAGAGCTACCAAGCTCGAGCCAAAGCCCGATCTCCTGAATTCTGCTCCTAGAAAAAGTACGTCGAGCGAAAAGATGCAATCGAAAGAGGAGAACAAGGTTCAGCTATCCACGAAGTCGACAAAAGAGGAGAACAAAGTTCAGACCTCAAAGAAATCTGCAGCAAACGGAGACATGGAGGGGGAGAACTCAAATAAGAAAAGAACTTCAGCTGGAAAGAAATTGCCAAATGATTCAGCTCATAAAGGGCCTCTGGGAAATTTGGTAAAGATCCCGTTGAATAATAGAAGATTGGCAGACAGTCATCTGTCGTGGGCGTCCCTCCCACCATCGCTTGCCAAGCTCGGAAAGGAAGTTTTGAAGCACAGAGATGCAGCTCAAACAGCTGCAGTAGAGGCAATGCAAGAAGCTTCTGTGGCAGAGAGCATACTTCGATGTTTAAGCACATATTCTGAGCTAACCATTTCTGCCAAAGATGACAACCCACAACCTACAGTAGAGCAGTTTTTGTCCCTCCATGCTAGCTTGACCCGTGCTCGTACCATCACCGACTCGCTATTTAAAACTATTCCCTCCGAATCATCACTCGAAGGTGAAGAGGCGCCATCGGAAGAAGCCGTAAAACTCACTTCAGACAGAAGAAAATTAGCAACTTTATGGATCCAAGCCGCTTTGGTCTCGAATCTATCGACTTTTTCGGTATACAGCAAGGAACCTAATTTGTTTCCGGCTCCATTTCAGAAAAACTCCGGGAGTCAACCTCTACTGGTTCTTGAAAATTCGTCCAAAAACTCTTCATCGAAACCCATATCCAAAACTCGCCAGGCGCTCGGATGGAAGTCTGTATCCACGATGACATCTCGTCGTGTAGGTGATGGACCAACTGTTAATCAAAAGCCTCATGTTCAACCTTTGCCGGAATGGGTTAGAGGCAATGGCCTCAATGAAGCCGTTGAATTGGCAGACATATTACGGACTCAATTGCAAGACTGGTTTCTCGGGTTTGTGGAGAGATTCCTTGACGCAGAAGTGGACACATCGGTTTTGTCAGATAACAGTCAAGTACCTGGGATTTTGACCCAGCTCAAGAGCGTAAATGATTGGCTGGACGAGATTGGATCGACCAAAGACGAAGTAGAAACCACGCACGTTTCTTCCGAGACAATAGACAGGCTACGGAAGAAGATTTACGAGTATCTTCTCACACACGTCGAATCTGCAGCTGCTGCGCTTGGGACTGGATCTCAACCGCCATCTCAGGTCGATAAAAACGAACAGAAAGTACGAAGATGA 2130 45.68 MNTDVKVAGEHRSSLLQVVSIVPALAGSELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFIHVERLESASPVPILHGFRPIPGRHPCVGSPEDIVATHSLNFLSSSSVSSKTGEKVKSGSKEKSSNLRLNRISVKEEQSEKKVPSFSRSKSNLYKSALNLDVKRESLTRLKSSKSIPSSPTSCYSLPSSFEKFSSGIKQQEAKIKGPEKGTARAGLPEKSASVRSASPTVRKASMVNPIRNLVQGIELGAKALRKSWEGNMEVKNKDNSKFRATKLEPKPDLLNSAPRKSTSSEKMQSKEENKVQLSTKSTKEENKVQTSKKSAANGDMEGENSNKKRTSAGKKLPNDSAHKGPLGNLVKIPLNNRRLADSHLSWASLPPSLAKLGKEVLKHRDAAQTAAVEAMQEASVAESILRCLSTYSELTISAKDDNPQPTVEQFLSLHASLTRARTITDSLFKTIPSESSLEGEEAPSEEAVKLTSDRRKLATLWIQAALVSNLSTFSVYSKEPNLFPAPFQKNSGSQPLLVLENSSKNSSSKPISKTRQALGWKSVSTMTSRRVGDGPTVNQKPHVQPLPEWVRGNGLNEAVELADILRTQLQDWFLGFVERFLDAEVDTSVLSDNSQVPGILTQLKSVNDWLDEIGSTKDEVETTHVSSETIDRLRKKIYEYLLTHVESAAAALGTGSQPPSQVDKNEQKVRR 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49810460 49813759 + Bma015766.1 Bma02g00967 78217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00967 709 PANTHER DUF936 FAMILY PROTEIN 1 707 - -
Bma02g00967 709 Pfam Plant protein of unknown function (DUF936) 1 690 IPR010341 -
Bma02g00967 709 MobiDBLite consensus disorder prediction 690 709 - -
Bma02g00967 709 PANTHER EXPRESSED PROTEIN 1 707 IPR010341 -
Bma02g00967 709 MobiDBLite consensus disorder prediction 340 354 - -
Bma02g00967 709 MobiDBLite consensus disorder prediction 273 367 - -
Bma02g00967 709 MobiDBLite consensus disorder prediction 302 328 - -
Bma02g00967 709 MobiDBLite consensus disorder prediction 210 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00967 - - - zju:107421786 874.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00967 Bma-Chr2:49810460 Bma07g00472 Bma-Chr7:5715568 7.57E-26 dispersed
Bma02g00967 Bma-Chr2:49810460 Bma15g00187 Bma-Chr15:1937806 5.83E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1277 . . . . . Bpe14g01063 . . . Cmo17g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00449 . Bda11g00478 Bda13g00251 . . Bma02g00967 . . . . . Cma17g00609 Car08g00175 Car17g00576 . Cpe17g01086 . . . . . . . . . . . . . . . . . Cme11g02453
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009199 1 1 2 1 2 1 2 0 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00967 Bma_Chr02 FPKM 6.878788 8.126231 11.576229 11.933284 32.171581 31.276804 31.667082 0.0 0.137271 0.289252