Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00968 ATGGGCACCCCACTTCTTGTGGTTTGGATATTAGCTTGCTTGCTGCCTTTTGTGTTGTCTGATTATCAAGGAGATGCTCTATATTCTTTGAGAAACTCACTAAATGCAACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTTAACCCATGCACCTGGTCCAATGTTATTTGCACCGACAATCTCGTAACTTCTGTATCATTGTCGTCAATGGGATTCACAGGAACCTTGTCCCCAAAAGTTGGAGCTCTAAAATCTCTCAACACTCTAAATTTACAAGGAAATTACATTACTGGTGAAATACCTGATGAGCTTGGAAATATTACAAGTTTGGCGAGCTTGGATTTGGAAAACAACAAGTTAATAGGTCAAATACCATCCTCCCTTGGAAATCTTAAGAGACTTCAGTTCTTGACATTGAGTCAAAATAATCTTTCAGGGACCATTCCTGAGTCACTTTCACTTCTTCCGGGCCTGATAAATATTTTGCTCGATTCAAATAATCTCAGTGGTCCAATTCCAGAAAAATTATTTCAAATTCCAAAATATAATTTCTCAGGAAATAGGTTGAACTGTGGTGTAAATACTCACTCTTGTATATCTGATAGTTATAGCTCGGGCCGTTCACACAAGCCGAAAATTGGCATTATAGTTGGGCTTGTTGGAGGGTTTGCAATTATTCTCCTTTTGGGTGGATTTTTATTTTGTCTTTGCAGAGGTAGACACAAAGGTTACAAGCGTGAAATTTTTGTGGATGTCGCAGGCGAAGTTGACCGAAGAATCGCATTTGGTCAACTGAAAAGATTTGCATGGAGAGAGTTACAGTTAGCAACAGACAATTTCAGCAAGAAAAATGTGTTGGGACAAGGAGGATTCGGAAAGGTTTACAGAGGGGTGCTTGCTGACAACACGAAAATTGCAGTGAAACGCCTCACCGACTTCGAAAGCCCTGGAGGAGATGCAGCCTTCCAACGAGAAGTTGAGATGATTAGTGTAGCCGTTCATAGGAATCTACTACGACTCATCGGATTCTGCACCACGACAACAGAACGCCTTCTGGTTTATCCCTTCATGCAAAACTTAAGCGTTGCCTATCAACTAAGAGAAATTAAACCTGGAGATCCTGTTTTGGATTGGCCTACGAGAAAGCGAATTGCCTTAGGCACCGCTAGGGGATTGGAGTATCTTCACGAGCATTGCAATCCGAAGATCATTCATCGTGATGTTAAGGCCGCGAATGTGTTGCTTGATGAGGATTTTGAAGCAGTTGTAGGCGATTTCGGTTTGGCAAAGTTGGTAGATGTTCGGAAGACTAACGTGACCACTCAAGTACGAGGAACAATGGGTCACATAGCCCCCGAGTACTTGTCGACAGGAAAGTCGTCCGAAAGGACTGATGTTTTTGGTTATGGGATCATGTTGCTGGAACTTGTGACCGGTCAACGGGCAATTGACTTTTCACGGTTGGAAGAAGAAGACGATGTTTTACTGCTAGACCATGTCAAGAAGCTGGAACGAGAGAAGAAACTGGATGCCATCGTCGACGACAACCTCGATAAAAACTATAACATCGAAGAGGTGGAAATGATGATTCAAGTTGCGTTGCTTTGCACCCAACCATCACCGGACGAAAGGCCGGCCATGTCAGAGGTGGTCCGAATGCTGGAAGGAGAGGGGCTCGCGGAGAGATGGGAAGAATGGCAACATGTAGAAGTATCTCGGCGAGAGGAATACGATAGGTTGCAGAGAAGATTTGATTGGGGTGAAGATTCGATTTACAACCAAGATGCTATTCAATTATCCGGAGGAAGATGA 1818 43.29 MGTPLLVVWILACLLPFVLSDYQGDALYSLRNSLNATANQLTDWNPNQVNPCTWSNVICTDNLVTSVSLSSMGFTGTLSPKVGALKSLNTLNLQGNYITGEIPDELGNITSLASLDLENNKLIGQIPSSLGNLKRLQFLTLSQNNLSGTIPESLSLLPGLINILLDSNNLSGPIPEKLFQIPKYNFSGNRLNCGVNTHSCISDSYSSGRSHKPKIGIIVGLVGGFAIILLLGGFLFCLCRGRHKGYKREIFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSKKNVLGQGGFGKVYRGVLADNTKIAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTTTERLLVYPFMQNLSVAYQLREIKPGDPVLDWPTRKRIALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKKLDAIVDDNLDKNYNIEEVEMMIQVALLCTQPSPDERPAMSEVVRMLEGEGLAERWEEWQHVEVSRREEYDRLQRRFDWGEDSIYNQDAIQLSGGR 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49871952 49877636 + Bma015769.1 Bma02g00968 78218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00968 605 SMART serkin_6 282 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00968 605 Gene3D Phosphorylase Kinase; domain 1 251 358 - -
Bma02g00968 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Bma02g00968 605 Pfam Protein kinase domain 283 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00968 605 SUPERFAMILY Protein kinase-like (PK-like) 262 557 IPR011009 -
Bma02g00968 605 Pfam Leucine rich repeat N-terminal domain 21 59 IPR013210 -
Bma02g00968 605 Gene3D Ribonuclease Inhibitor 21 215 IPR032675 -
Bma02g00968 605 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Bma02g00968 605 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 605 - -
Bma02g00968 605 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 605 - -
Bma02g00968 605 ProSiteProfiles Protein kinase domain profile. 282 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00968 605 Gene3D Transferase(Phosphotransferase) domain 1 359 576 - -
Bma02g00968 605 SUPERFAMILY L domain-like 23 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00968 Bma-Chr2:49871952 Bma07g00724 Bma-Chr7:18574395 3.43E-174 dispersed
Bma03g01074 Bma-Chr3:13121150 Bma02g00968 Bma-Chr2:49871952 0 transposed
Bma06g00611 Bma-Chr6:32622271 Bma02g00968 Bma-Chr2:49871952 1.01E-14 transposed
Bma09g00504 Bma-Chr9:41422545 Bma02g00968 Bma-Chr2:49871952 3.05E-90 transposed
Bma02g00968 Bma-Chr2:49871952 Bma06g01441 Bma-Chr6:51107230 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66365 PF00069 Pkinase 4.40E-42 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00968 - - csv:116403405 970.304