Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00976 ATGTACAAATCAACTTCATCGTCTATATCCTCGCAGAACTGCATGGGAACCAGCACCGGTGGCGGCCTAACTCGCTACGGCTCCGCCCCCGGTTCTTTCCTGACCACAGCCGTTGATTCCGTGATCGGAGCGCATCCGAGCTCTTCCGCCGCTGCTGTTCGAACTCAGCAGGGCTTGGTGAACCCCTATTTCTCCTCCGGCGACTCCTCCGTCGAGTCGTCCGGTAAAATCATGTACGCCGCCGCATCCAACAATCCAAGAGGCTTGCAGAGGTCGTACGGCAGCCAGGAGCTGGCGCTTGGAGATTTGAACGGCATTGGAGGTGGATCTTCTTCTTCCTCAACTTCTTCTTCTTCTTCGTCTTTGATGAGGCAGAGAAGCTCACCGGCGGGTTTCTTCTCCCACCTCGCCGCTCCGGACAGCAATGGATTTTCAGTTTCAAGGGGAGGTGGGAATTACGGCTCACAAGGTGGACCAAGTGGTCTTGGAGTTTCAAGATTGAAGCCTCAGCTGAGCTTCACAAGGCAAGATTCCCTCTCACAGATTTCCGAAGTGTCCGAGAACATGATTGACGGAATCGATTCGAATAATGCTCGCCAATCTTACGGCACTGCAACTAGCTTCGGGATCGGCTCTTGGGATGCCACCAATACCGTCGTGTTTTCTTCCCTCCAAAACAAACGTCCCAAGAACATCGATCCGGACATGTTCGACTCCCTTAACGTCTTAGATTCTCAGTTTAATCTTCCGGCAAGTCTTGAGATGGCATCGATGGAGAAGCTACTCCACATTCCCGAAGATTCTGTCCCCTGCAAGATCCGTGCCAAGCGTGGTTGTGCGACTCATCCCCGCAGTATTGCCGAAAGGGAAAGGAGGACGCGAATAAGTGGGAAATTGAAAAAATTACAAGAACTTGTGCCTAACATGGATAAGCAAACAAGCTACGCCGACATGTTGGACTTGGCAGTGCAGCATATCAAGGGACTTCAAAATCAAATCGAGAATCTTCACAAAGACATTGAGAATTGCACATGTGGATGCAAATAG 1047 51.1 MYKSTSSSISSQNCMGTSTGGGLTRYGSAPGSFLTTAVDSVIGAHPSSSAAAVRTQQGLVNPYFSSGDSSVESSGKIMYAAASNNPRGLQRSYGSQELALGDLNGIGGGSSSSSTSSSSSSLMRQRSSPAGFFSHLAAPDSNGFSVSRGGGNYGSQGGPSGLGVSRLKPQLSFTRQDSLSQISEVSENMIDGIDSNNARQSYGTATSFGIGSWDATNTVVFSSLQNKRPKNIDPDMFDSLNVLDSQFNLPASLEMASMEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQNQIENLHKDIENCTCGCK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50126160 50129461 + Bma015779.1 Bma02g00976 78226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00976 348 PANTHER TRANSCRIPTION FACTOR BHLH129 22 344 - -
Bma02g00976 348 SMART finulus 285 335 IPR011598 GO:0046983
Bma02g00976 348 MobiDBLite consensus disorder prediction 147 166 - -
Bma02g00976 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 329 IPR011598 GO:0046983
Bma02g00976 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 341 IPR036638 GO:0046983
Bma02g00976 348 MobiDBLite consensus disorder prediction 104 125 - -
Bma02g00976 348 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 344 - -
Bma02g00976 348 Coils Coil 319 339 - -
Bma02g00976 348 MobiDBLite consensus disorder prediction 106 125 - -
Bma02g00976 348 CDD bHLH_AtbHLH_like 284 336 IPR045239 -
Bma02g00976 348 Pfam Helix-loop-helix DNA-binding domain 284 330 IPR011598 GO:0046983
Bma02g00976 348 Gene3D - 276 340 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00976 Bma-Chr2:50126160 Bma10g00189 Bma-Chr10:1686342 1.12E-54 dispersed
Bma02g00976 Bma-Chr2:50126160 Bma10g00272 Bma-Chr10:2466313 3.00E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56905 PF00010 HLH 4.80E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00976 - - pavi:110769086 399.053