Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00976 | ATGTACAAATCAACTTCATCGTCTATATCCTCGCAGAACTGCATGGGAACCAGCACCGGTGGCGGCCTAACTCGCTACGGCTCCGCCCCCGGTTCTTTCCTGACCACAGCCGTTGATTCCGTGATCGGAGCGCATCCGAGCTCTTCCGCCGCTGCTGTTCGAACTCAGCAGGGCTTGGTGAACCCCTATTTCTCCTCCGGCGACTCCTCCGTCGAGTCGTCCGGTAAAATCATGTACGCCGCCGCATCCAACAATCCAAGAGGCTTGCAGAGGTCGTACGGCAGCCAGGAGCTGGCGCTTGGAGATTTGAACGGCATTGGAGGTGGATCTTCTTCTTCCTCAACTTCTTCTTCTTCTTCGTCTTTGATGAGGCAGAGAAGCTCACCGGCGGGTTTCTTCTCCCACCTCGCCGCTCCGGACAGCAATGGATTTTCAGTTTCAAGGGGAGGTGGGAATTACGGCTCACAAGGTGGACCAAGTGGTCTTGGAGTTTCAAGATTGAAGCCTCAGCTGAGCTTCACAAGGCAAGATTCCCTCTCACAGATTTCCGAAGTGTCCGAGAACATGATTGACGGAATCGATTCGAATAATGCTCGCCAATCTTACGGCACTGCAACTAGCTTCGGGATCGGCTCTTGGGATGCCACCAATACCGTCGTGTTTTCTTCCCTCCAAAACAAACGTCCCAAGAACATCGATCCGGACATGTTCGACTCCCTTAACGTCTTAGATTCTCAGTTTAATCTTCCGGCAAGTCTTGAGATGGCATCGATGGAGAAGCTACTCCACATTCCCGAAGATTCTGTCCCCTGCAAGATCCGTGCCAAGCGTGGTTGTGCGACTCATCCCCGCAGTATTGCCGAAAGGGAAAGGAGGACGCGAATAAGTGGGAAATTGAAAAAATTACAAGAACTTGTGCCTAACATGGATAAGCAAACAAGCTACGCCGACATGTTGGACTTGGCAGTGCAGCATATCAAGGGACTTCAAAATCAAATCGAGAATCTTCACAAAGACATTGAGAATTGCACATGTGGATGCAAATAG | 1047 | 51.1 | MYKSTSSSISSQNCMGTSTGGGLTRYGSAPGSFLTTAVDSVIGAHPSSSAAAVRTQQGLVNPYFSSGDSSVESSGKIMYAAASNNPRGLQRSYGSQELALGDLNGIGGGSSSSSTSSSSSSLMRQRSSPAGFFSHLAAPDSNGFSVSRGGGNYGSQGGPSGLGVSRLKPQLSFTRQDSLSQISEVSENMIDGIDSNNARQSYGTATSFGIGSWDATNTVVFSSLQNKRPKNIDPDMFDSLNVLDSQFNLPASLEMASMEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQNQIENLHKDIENCTCGCK | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50126160 | 50129461 | + | Bma015779.1 | Bma02g00976 | 78226 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00976 | 348 | PANTHER | TRANSCRIPTION FACTOR BHLH129 | 22 | 344 | - | - | |
Bma02g00976 | 348 | SMART | finulus | 285 | 335 | IPR011598 | GO:0046983 | |
Bma02g00976 | 348 | MobiDBLite | consensus disorder prediction | 147 | 166 | - | - | |
Bma02g00976 | 348 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 279 | 329 | IPR011598 | GO:0046983 | |
Bma02g00976 | 348 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 282 | 341 | IPR036638 | GO:0046983 | |
Bma02g00976 | 348 | MobiDBLite | consensus disorder prediction | 104 | 125 | - | - | |
Bma02g00976 | 348 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 22 | 344 | - | - | |
Bma02g00976 | 348 | Coils | Coil | 319 | 339 | - | - | |
Bma02g00976 | 348 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - | |
Bma02g00976 | 348 | CDD | bHLH_AtbHLH_like | 284 | 336 | IPR045239 | - | |
Bma02g00976 | 348 | Pfam | Helix-loop-helix DNA-binding domain | 284 | 330 | IPR011598 | GO:0046983 | |
Bma02g00976 | 348 | Gene3D | - | 276 | 340 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g00976 | Bma-Chr2:50126160 | Bma10g00189 | Bma-Chr10:1686342 | 1.12E-54 | dispersed | |
Bma02g00976 | Bma-Chr2:50126160 | Bma10g00272 | Bma-Chr10:2466313 | 3.00E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56905 | PF00010 | HLH | 4.80E-09 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00976 | - | - | pavi:110769086 | 399.053 |