Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00995 ATGTCGCTTGGATTGATAACTCTACTGGTTTCGGACAAGGCCCTTATTGACGCCGTTTCTGGAATTTCAAACAGTCATGAGGTTGCAATGTTGATCTTAATTTTAATTTTTGCGACTGCACACAGTGGGTTGGCTAGTCTCCGAGATATGGGTGAGAAACTGATAGGAGAACGAGCTTACCGTGTTTTGTTTGCAGGAATTTCTTTACCTTTGGCTGTCAGCACTGTCGTGTACTTCATCAACCACCGATATGATGGAGTACAGTTGTGGCAGCTCAAAAGTGTTCCTGGTGTTCGTCAAGCTGTGTGGCTTAGTTCATTTATTTCGTTTTTCTTTCTCTATCCTTCAACCCTTAATTTGTTAGAGGTGGCTGCTGTGGACAAACCTAAACTGCATCTTTGGGAAACTGGGATCGTGAGAATCACCAGGCATCCCCAGGTATGA 444 43.92 MSLGLITLLVSDKALIDAVSGISNSHEVAMLILILIFATAHSGLASLRDMGEKLIGERAYRVLFAGISLPLAVSTVVYFINHRYDGVQLWQLKSVPGVRQAVWLSSFISFFFLYPSTLNLLEVAAVDKPKLHLWETGIVRITRHPQV 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50529093 50529891 - Bma015808.1 Bma02g00995 78245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00995 147 PANTHER 15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC 13 147 - -
Bma02g00995 147 Pfam NnrU protein 30 147 IPR009915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00995 K15744 Z-ISO; zeta-carotene isomerase [EC:5.2.1.12] - zju:107422240 239.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00995 Bma06g01412 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00995 Bma-Chr2:50529093 Bma06g01412 Bma-Chr6:50864786 1.86E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0883 . . . . . Blo02g00422 Blo07g00080 . . . Bpe13g00744 Bma02g00995 Bma06g01412 . . . . . . . . . . . . . . . . Cla07g01497 Cam07g1596 Cec07g1692 Cco07g1655 Clacu07g1586 Cmu07g1552 Cre07g1929 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0034555 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00995 Bma_Chr02 FPKM 15.100085 13.575762 8.568234 7.379069 13.927146 14.277294 15.000663 8.327253 9.218266 8.813201