Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00998 ATGGTTCTGTCTCTACATTTGTCTGCTCCTCGGGATAGCCCACCACCATCATTTCTCTATACAAACTTTGTCCATGGAGATCCTGTATCTTTACTAGGAAATATAAGAAGAAATTATCCAAGAAAAGTGAATTTTAGAAACCTTAGCATTTCCATTTCTTGTTCGATGCCCAAAATTGTTCGTAGCCGACCACTTGATGGCCATGTTGTAAAGCAAAACAAAATTCGGTTTGTTCAAAAACTTAAAACACTCCTTCTTTCTAAACTCAAACAATTCATTCCAATCGAGCTTCTTTCCAAATGTAGAGCATATCTTTCCATTCATAAACCTCGTTCTATACTCTCAATGATTCATCGTTATCCGACCATTTTTGAAGTTTTCTCAATTCCTTTTCCACCCACTCCACTTAATGCAACAAAGTCATATCCTCAGCTCTGTGTTCGTCTAACTCCAGCTGCAGCAGCCCTTGCTGCAAAGGAATTAAAATTCAAATTGGAAATCTCAACAACCTTGGCCCAAAAACTTCAAAAATTACTCATGATGTCTTCACACCAGAGACTTCTTTTGTCAAAGCTAGTTCACCTTGCACCTGATCTTGGCCTACCCCCTAACTTTAGGTCTCGGCTGTGCAATGATCACTCAGACAAATTTAAAACTGTTGATACTTCCTATGGTCGTGCATTGGAACTCGTTTCTAGGGACCCCAACTTGTCAAAACCATTACCTTTCACACAAGATCATTTGCCTGAGCTGATTGTTGATAGGCCTTTAAAATTCAAGCATCTGAGACTAAGAAAGGGGTTGAATTTAAAAAGACACCACCAGGCATTTTTGTTAAAGTTCAATGAAATACCAGATATCTGTCCTTATAATACTCAGATTGACGATTTAGCTAAAGAATCAATTGAGGCAGAGAAAAGGGCCTGTGCTGTGGTGCGGGAGGTCCTGGGGATGATGGTTGAAAAGAGAACTTTAATAGACCATCTAACACACTTCAGGAAGGAATTTGGACTGCCCAACCAGCTGAGGGGCCTGATTATGAGGCATCCAGAATTATTCTATGTGAGCTTGAAAGGAGACAGAAACTCTGTATTTTTAGTCGAAGGGTTTAATGATAAGGGTTCCCTTTTGGAGAAGGACGAAGCTTTGGTTATTAAAGATCAATGGATGGAGTTAGCCAAAGATTCAAAAATGGTTAGAAGAGAGCGGAGGAGAAAACAAATCTATGGCTGTAGTGATAATTATGAGGTTGAAAGCGATGATGATTATGACGATAATGATGATTTTGAGTATGATGATGATGGTTTTGAGAATTTATTTGAATCTGAAGAGTTAGATTTTGGGAATGACTATGAGAGTCCTGATTCCCGTGATAGAACCATTAGTGAATTTTGGACCTCAAATACTGCTGAAGATCTTAATGATGTTCATGAAGGACATAAAGAACCCTGGTAA 1455 38.83 MVLSLHLSAPRDSPPPSFLYTNFVHGDPVSLLGNIRRNYPRKVNFRNLSISISCSMPKIVRSRPLDGHVVKQNKIRFVQKLKTLLLSKLKQFIPIELLSKCRAYLSIHKPRSILSMIHRYPTIFEVFSIPFPPTPLNATKSYPQLCVRLTPAAAALAAKELKFKLEISTTLAQKLQKLLMMSSHQRLLLSKLVHLAPDLGLPPNFRSRLCNDHSDKFKTVDTSYGRALELVSRDPNLSKPLPFTQDHLPELIVDRPLKFKHLRLRKGLNLKRHHQAFLLKFNEIPDICPYNTQIDDLAKESIEAEKRACAVVREVLGMMVEKRTLIDHLTHFRKEFGLPNQLRGLIMRHPELFYVSLKGDRNSVFLVEGFNDKGSLLEKDEALVIKDQWMELAKDSKMVRRERRRKQIYGCSDNYEVESDDDYDDNDDFEYDDDGFENLFESEELDFGNDYESPDSRDRTISEFWTSNTAEDLNDVHEGHKEPW 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50611816 50613270 - Bma015810.1 Bma02g00998 78248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00998 484 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 39 447 - -
Bma02g00998 484 Pfam Plant organelle RNA recognition domain 60 397 IPR021099 GO:0003723
Bma02g00998 484 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 39 447 IPR045040 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00998 - - - qsu:112036545 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00998 Bma-Chr2:50611816 Bma03g00350 Bma-Chr3:2611907 1.06E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1082 . . . . . . . . . Cmo17g00545 . . . . . . . Bhi01g02663 . . . Hepe05g1249 . . . . . . . . . . . . . . . . . Blo02g00417 . . Bda13g00292 . . Bma02g00998 . . . . . Cma17g00564 . Car17g00518 Cpe12g00478 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010601 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 2 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00998 Bma_Chr02 FPKM 21.147085 20.909843 17.202427 13.902605 13.458359 14.273946 14.959768 15.534867 15.608956 18.26745