Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00999 ATGGCTGGGATTCGGAGGATGAAGCTCGGTTCTCAGGGTCTGGAAGTGTCTGCCCAAGGCCTTGGATGCATGGGTATGTCTGCTTTTTACGGCGACCCTAAGCCTGATTCCGATATGATTGCTCTGATCCAACATGCCATAGCCGCTGGAGTCACCTTCTTGGATACTTCTGATATATACGGTCCTTTTACGAACGAAATCCTTTTGGGGAAGGCTCTCAAAGAAGGAGTGCGGGAGAAAGTTGAGTTGGCCACCAAATTCGGTATTTCCTTCGCCGATGGGAAAAGGGAGATACGCGGTGATCCAGCCTATGTGAGAGCCGCCTGCGAGGCGAGCCTGAAGCGGCTCGATATCGATTGCATTGATCTATATTATCAGCATCGGATTGACACTAAGGTCCCGATTGAAATCACGATTGGGGAGCTGAAGAAACTAGTTGAAGAGGGTAAAATCAAGTACATTGGTCTATCCGAAGCCTCAGCTTCCACCATTAGAAGAGCTCATGCTGTTCATCCGATAACAGCAGTGCAACTGGAATGGTCCTTGTGGTCACGAGATGTTGAAGAAGATATAATTCCAACCTGCAGGGAGCTTGGTATTGGAATTGTGGCCTACAGTCCTCTTGGTCGAGGATTCTTATCAGCTGGACCTAAGTTTGTCGAAGAGCTCTTTAAAAACAACGACGATTTTCGAAAGTTTCTGCCAAGGTTTCAACCCGAAAATCTCGAGCATAACAAAACTATATTTGAGCGGGTTAGCGAGATGGCATCAAGGAAAGGATGCACGCCTGCGCAGCTGGCCTTGGCCTGGGTCCACCACCAAGGCAACGATGTCTGCCCCATTCCGGGGACAACAAAGGTTGTAAATTTTGAGCAAAACATTGGGGCCTTGACCGTGAAATTGACGGCAGAAGAAATGGCAGAGCTCGAATCCTTCGCGTCGGCAGATGCTGTCAAGGGTGATCGATATGGGAGTGGAATAGCTACTTGGAAGGAGTCCGAGACGCCTCCGCTTTCGTCTTGGGAGGCCTGA 1032 49.42 MAGIRRMKLGSQGLEVSAQGLGCMGMSAFYGDPKPDSDMIALIQHAIAAGVTFLDTSDIYGPFTNEILLGKALKEGVREKVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTKVPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEDIIPTCRELGIGIVAYSPLGRGFLSAGPKFVEELFKNNDDFRKFLPRFQPENLEHNKTIFERVSEMASRKGCTPAQLALAWVHHQGNDVCPIPGTTKVVNFEQNIGALTVKLTAEEMAELESFASADAVKGDRYGSGIATWKESETPPLSSWEA 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50616426 50618110 + Bma015811.1 Bma02g00999 78249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00999 343 Gene3D - 4 339 IPR036812 -
Bma02g00999 343 PANTHER AUXIN-INDUCED PROTEIN PCNT115-LIKE 4 341 - -
Bma02g00999 343 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 4 341 - -
Bma02g00999 343 SUPERFAMILY NAD(P)-linked oxidoreductase 5 315 IPR036812 -
Bma02g00999 343 CDD AKR_AKR13D1 5 309 - -
Bma02g00999 343 Pfam Aldo/keto reductase family 23 312 IPR023210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00999 - - - jre:109020709 601.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00725 Bma-Chr2:35498426 Bma02g00999 Bma-Chr2:50616426 2.19E-27 dispersed
Bma02g00780 Bma-Chr2:41377884 Bma02g00999 Bma-Chr2:50616426 7.27E-24 dispersed
Bma02g00999 Bma-Chr2:50616426 Bma14g01257 Bma-Chr14:20624823 6.25E-100 dispersed
Bma02g00999 Bma-Chr2:50616426 Bma02g01000 Bma-Chr2:50637618 4.73E-140 tandem
Bma08g00397 Bma-Chr8:9704825 Bma02g00999 Bma-Chr2:50616426 5.82E-23 transposed
Bma02g00999 Bma-Chr2:50616426 Bma06g01408 Bma-Chr6:50839823 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00415 . . Bda13g00293 . Bpe13g00748 Bma02g00999 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002127 3 2 5 3 1 1 2 1 1 4 1 1 2 2 2 1 2 3 2 1 3 3 2 3 3 2 1 1 2 5 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00999 Bma_Chr02 FPKM 0.495677 2.046751 1.059703 1.505553 10.617968 11.75925 7.447411 0.0 0.0 0.0