Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01001 GAGGAAAAGAAGGCGAAGAAGAAGAAGAAATCCAGTTCCGGAAGTGGAGGGATGTTGCTATTAAAGGTGAGGCTAGATCATCAAGTTCAATTCGGGGAGCATGTAGCAATTGTAGGGTCTACTAGAGAACTGGGCTCATGGAAGAAGAGCGTTCCTCTGAATTGGAGTGAGAATGGATGGGTTTGCGATTTGGATCTGCAAGGGGGTGATTCAGTTGAGTACAAGTTCGTAATTATTAGAAAGGATAACAGCATGTCGTGGGAAGGAGGATCCAATCGAGTTCTCCAGCTTCCTAAGAAAGGGGTTTTCAGCTCGGTTTGCCGATGGAATGCTACTGATGAGGCTTTGGAATTATTGCAATTGGAAGAACAGGTTGAAGAAGAAGAAGAAGAAAAAAGGGAGGGTGTGAGCAATGATGAATCACTTGAGGAAGTGGAGATGAGCCCATTTGTGGGTCAATGGCAAGGGAAGGCTGTCTCTTTTATGCGATCCAACGAACATGGTATCCGAGAAAATGAGAGAAAATGGGATACCTCTGGTCTTCAGGGATTGGCTCTAAAGTTAGTAGAAGGAGATCGAAATGCCAGGAATTGGTGGAGAAAGCTTGAACTTGTACGTGAGCTTCTAGTTGAAAGTTTGTCTTCTGAGGCCCGGTTGGAGGCTCTAATATATTCTGCCATCTACCTTAAGTGGATAAACACAGGCCAAATTCCTTGTTATGAAGATGGAGGTCACCACCGACCTAATAGGCATGCTGAGATTTCCAGGCTTATATTCCGCGAATTGGAAAGGATCTCTTACAAGAAAGCTATTTCACCCCAGGAGGTGCTTGTTCTCCGAAAAATTCATCCATGTTTACCATCTTTTAAAGCAGAGTTTACTGCTTCGGTACCCTTAACTCGAATACGAGATATTGCTCATCGAAATGACATCCCACATGACCTCAAGCAAGAAATCAAACACACAATACAAAACAAGCTTCATCGTAATGCTGGTCCAGAAGATTTAATTGCTACAGAAGCAATGCTGGCAAGAATCACTAAAAACCCTGGTCAATACAGCGAAGCATTTGTGGAACAGTTCAAGATATTCCATCGTGAACTGAAAGACTTTTTTAATGCTGGAAGTCTTGCTGAACAACTTGAATCAATTCGGGGATCTATGGATGAATGCGGTATATCAGCTCTTTCAAGTTTTTTGGATTTGAAACGGAGCTTAGATGCCAATGACGAATCAAACAATTCTGTGGAAAAAGCTGGCATAGACCTGTTGTTCAAAATTATGCAATCTTTGAATGCAGTGAGAGAAATAGTTGTTAAAGGTCTTGAAAGTGGTCTAAAAAATGATGCTCCTGATGCTGCGATTGCTATGCGTCAAAAGTGGCGTCTTTGTGAGATTGGGCTTGAGTACTACTTATTTGTTCTTCTGAGTAGGTTCCTCAATATACTTGAAGCAAGGGGAGGGGCTAACTGGCTTGCAGGAAATGTAGAATCGGAAAGCGTAAGCTCTTGGAATGATCCTCTTGCTGTCCTTATCATTGGCATTAATCAGTTGCTGATTTCTGGTTGGAAGCCAGAAGAGTGTACAGCTATTAAGAATGAGCTTTTTGCTTGGAAGGACAGAGGTCTCTCTGAAAGTGAAGGTAGAAGTGAAGATGGGAAGAGAATCTGGGCATTGAGGCTCAAGGCAACTCTTGATAGAGCTAGAAGACTAACTGAAGTATACTCTGAAGCTCTTCTTCAAATATTCCCTGAGAAAGTCCAGACGCTAGGTAAGGCTTTAGGTATCCCTGAGAACAGTGTAAGAACTTATGCAGAGGCTGAAATTCGGGCAAGTGTAATTTTTCAGGTCTCCAAACTTTGCACTGTTCTGTTGAAAGCAGTCAGAATTTCCCTTGGTTCTCAGGGTTGGGACATTCTTGTACCAGGACTGGCTTCGGGAATCCTAATACAGGTGGAGAGCATTATCCCTGGGTCTCTACCAGCATCTGAAGGACCTATCATACTCATGGTTGACAAAGCTGATGGAGATGAGGAGGTAACAGCTGCTGGAAGTAACATAGTGGGCATTGTCCTTCTACAAGAGCTCCCTCACTTATCTCATCTCGGTGTTCGGGCTAGACAAGCAATTGTTTTTGTGACTTGTGAAGACGATGACAGAGTTGCTGATATTAAGAAACTTAGTGGACAATTTGTGAGGTTGGAAGCGTCCTCGACGGCTGTTAATTTGGTTTCGTTATCCGATAAGAACACTGATAATTCTGCAACAAATCTTTCAGCTGCTAATTCATCTGGAATCGAGTCTTCCGGGCTGGTTGATCCTCTCCGATCATCTGTTAAAGCTCCTTACTCCGGTCAGGGCGTGCTTGCTGGAGGTGTCATGTTACTTGCAGATGCAGATGCCCAGATTTCCGGTGCCAAGGCTGCTGCTTGTAGTCGTTTGGCATCTTTGGCAGCACTTTCCGAAAAAATTTATAGCGAACATGGGGTCCCAGCATCATTTGGTGTCCCTAAAGGAGCAGTGATTCCATTTGGCTCCATGGAAATGGCGGTAGAGCAGAGCGGATCAACGGAATCTTTCAAGTCTTTAATGGACCAGGTAGAAATGGCCAAGCTCGAAGGCGGTGAGCTCGATAAACTCTGCTCCAACCTCCAGGAACTGATATCATCTCTCCAGGTTCCAAAGCAGATCATCGATAGCTTAGGGAGAATATTTTCCGGCAAAGCACGGTTAATCGTTCGATCTAGTGCTAACGTCGAAGATCTGGCTGGAATGTCTGCAGCTGGACTTTACGAATCGATTCCTAATGTCAGTCCTTCAAATCCGGTAGTGTTTGGAAATGCCGTTAGTCATGTATGGGCTTCGTTATATACTCGTAGAGCGGTTCTGAGTCGCCGAGCATCCGGAGTACCTCAAAATGAAGCTTCAATGGCAGTTCTGGTTCAAGAAATGCTCTCACCGGACTTATCCTTTGTGTTACACACTCTCAGCCCAACCGACCGAGACAACAAATCCGTCGAGGCCGAGATTGCTTCCGGACTTGGCGAAACTCTGGCTTCCGGCACTCGTGGAACGCCCTGGCGTTTTTCATCTGGGAAATTTGACGGCCTCGTTCGAACCCTAGCATTTGCAAACTTCAGTGAGGAACTGGTGGTTTTAGGATCAGGTCCCGCGGATGGTGAAGTGATCCCGTTGACGGTTGATTACAGTAAGAAACCTTTGACTGTTGATCCCATCTTTCGCCATCAACTTGGTCAGCGTCTGTCGGCGGTCGGTTTTTTTCTCGAACAGAAGTTTGGTTGTGCCCAGGACGTCGAAGGATGTGTCGTCGGCAAAGATATCTTCGTCGTCCAGACCCGTCCACAACCACTG 3372 45.17 EEKKAKKKKKSSSGSGGMLLLKVRLDHQVQFGEHVAIVGSTRELGSWKKSVPLNWSENGWVCDLDLQGGDSVEYKFVIIRKDNSMSWEGGSNRVLQLPKKGVFSSVCRWNATDEALELLQLEEQVEEEEEEKREGVSNDESLEEVEMSPFVGQWQGKAVSFMRSNEHGIRENERKWDTSGLQGLALKLVEGDRNARNWWRKLELVRELLVESLSSEARLEALIYSAIYLKWINTGQIPCYEDGGHHRPNRHAEISRLIFRELERISYKKAISPQEVLVLRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPEDLIATEAMLARITKNPGQYSEAFVEQFKIFHRELKDFFNAGSLAEQLESIRGSMDECGISALSSFLDLKRSLDANDESNNSVEKAGIDLLFKIMQSLNAVREIVVKGLESGLKNDAPDAAIAMRQKWRLCEIGLEYYLFVLLSRFLNILEARGGANWLAGNVESESVSSWNDPLAVLIIGINQLLISGWKPEECTAIKNELFAWKDRGLSESEGRSEDGKRIWALRLKATLDRARRLTEVYSEALLQIFPEKVQTLGKALGIPENSVRTYAEAEIRASVIFQVSKLCTVLLKAVRISLGSQGWDILVPGLASGILIQVESIIPGSLPASEGPIILMVDKADGDEEVTAAGSNIVGIVLLQELPHLSHLGVRARQAIVFVTCEDDDRVADIKKLSGQFVRLEASSTAVNLVSLSDKNTDNSATNLSAANSSGIESSGLVDPLRSSVKAPYSGQGVLAGGVMLLADADAQISGAKAAACSRLASLAALSEKIYSEHGVPASFGVPKGAVIPFGSMEMAVEQSGSTESFKSLMDQVEMAKLEGGELDKLCSNLQELISSLQVPKQIIDSLGRIFSGKARLIVRSSANVEDLAGMSAAGLYESIPNVSPSNPVVFGNAVSHVWASLYTRRAVLSRRASGVPQNEASMAVLVQEMLSPDLSFVLHTLSPTDRDNKSVEAEIASGLGETLASGTRGTPWRFSSGKFDGLVRTLAFANFSEELVVLGSGPADGEVIPLTVDYSKKPLTVDPIFRHQLGQRLSAVGFFLEQKFGCAQDVEGCVVGKDIFVVQTRPQPL 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50680883 50775754 + Bma030920 Bma02g01001 78251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01001 1124 Coils Coil 111 138 - -
Bma02g01001 1124 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 825 1122 IPR002192 GO:0005524|GO:0016301|GO:0016310
Bma02g01001 1124 Gene3D Immunoglobulins 19 110 IPR013783 -
Bma02g01001 1124 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 11 111 IPR002044 GO:2001070
Bma02g01001 1124 SUPERFAMILY Starch-binding domain-like 17 109 IPR013784 GO:0030246
Bma02g01001 1124 Pfam Starch binding domain 24 101 IPR002044 GO:2001070
Bma02g01001 1124 Gene3D - 986 1122 - -
Bma02g01001 1124 Gene3D - 794 984 IPR013815 GO:0005524
Bma02g01001 1124 PANTHER PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC 3 1123 - -
Bma02g01001 1124 SMART CBM_20_2 18 107 IPR002044 GO:2001070
Bma02g01001 1124 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 800 1122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01001 K15535 PWD; phosphoglucan, water dikinase [EC:2.7.9.5] - jre:108987321 1618.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01001 Bma-Chr2:50680883 Bma14g01813 Bma-Chr14:38886733 1.65E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0897 . . . . . Blo02g00408 Blo07g00074 . Bda13g00296 . Bpe13g00749 Bma02g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004547 2 0 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g01001 Bma_Chr02 FPKM 0.627737 0.958486 9.562471 9.55833 12.628557 15.553502 13.066545 7.747204 8.003076 7.031641