Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01012 ATGGAGAATCAAGATCAGAGAAAGATTCATGCTCCGGAGAATCATGGAGGAGTTCACCTTTGCCACAAATGTGGATGGCCCTTTCCTAATCCGCATCCTAGTGCTAGACATAGACGAGCACATAAAAGGGTTTGCGGAAAAATCGAAGGTCATAAGCTGATTGATTCAGAAGGAAGCAACCATTCCACACTGTCCGACGATGAGCACGCTTCTGACGACGATAACAAAAACCCTATTATTGTGGAGACTGTTAAAACCGAGAAGGGTATCGATGAATCGAAGGAAAAATTGAAGAGGTCAGAAGAAGATGTGTTTTCCGATGCCGTGGCTGACTTCTCAGAGAGTAAACTCGCCGGAAATACTAAAGATTCAGCATCTATTTCGGAAATTGATAAGAAAGAGGAGTTGACTAGTTCACAGAGTTTTAAGGACTGCGAAATTTCTGATCTTGTTCAATTGCCAAGCACTTTGTCCGACAATATCGAATTGCATAAACCGGAAGTTGGACAGAGTGCAATTGACGAGTTGGAGGCTGGAGCGGAAAACACACCGAGCCAACAAAGTCCGAATTTTCCAACGGATATTTATATCGACAGAGAAAATATGGATTCCCAAAGTAATGTTGCTGTTGAAACGAACAAGCCAGAGCTGAAAATAGAAGAAATAATCGAGAGAGCTTCAGATCCGATTGCTACCGAGGAAGTTGTTCGATTGAAGGAAGGGCATAGAGCTTGTATTGATCCGGAGATACCACAAGCTGATATGGCCTCCGAAGTCGCTGCAAAATCTTGCAGTTCGGACTATTTGGTTGAAAGCAATGACGGAGGAGGAGAAGAAGATCGGAACAAAAATGTGCATACTGTTTCTGTGCTCGATGACTTAAACATCTCTGACCATTCGGAGGCTCTGCTAAAAGATTTTAAGGACCATAAGGGAGTGAAAGTACAGCAACCCGAAAATACAGACTCGATCAAGGGAATGGAGGAGGGAGAAGATAAATCTTTTCTTTGTAAGCCATTGGATGAAATACCTGTTCGAGAACCAGATGCGACTGAAATGAAGTTCATTGATAGTGATAACCCGAAAGAAGAACAAGAGATCGATCGTATTCCAAAGGGTTCATTTCCTGTGGATTGTACGAGTAACTTTTCAGAAGTCGCATTTGTCGTTGAAGACGCTCCCCGTGAAGGATTCGATCTGAGTGACATATGTAAGGAAAATCCCGATACAAAGATCGAAGAAATGAAACGGCTTGAGTTGGAACATTTGCCAATGGTGGAAGAACTACCTGAAACTGATAGAAAAGACACCGACTGTGTTTCCGAATCAAGCACAATTGTTATCAACTCAAACGCTCACGATGGGAAGATGGAACCAGAAAATTCAAAACCAATTCTTGGTCCGGTCAATGATGAATCTTTAATTCACAGTTCTGCCACCATGGAGGATAATATTTCGGCAGAGGTTGGAGGAGCAGTTCTTATATCCAAGCCTTTGCAGGTCGAAGGCAACAATATCATCGAAGAAATGAAAGGCCTTGAGGAGGAACATTTGCCAATGGTGGAAGAACTACCCGAAACTGATAGAAAAGACATCGACTGTGTTTCCGAGTCAAGCACAATTGTTATCAACTCAAGCACTCACGATGGGAAGATGGAACCAGATAATTTGAAACCATTCCTTGGTCCGGTCAATGGCGAATCTTTAATTCACAGTTCTGCCACCATGGAGGATAATATTTCGGCAGAGGTTGGAGAAGCAGTTCTTATTTCCGAGCCTTTGCAGGTCGAAGGCAACAATATCATCGACAAACCAGTGATTGATGTTTTGGCTGACTCGAGTAGCCAAGCAGATAGTGTCGAAGCCACCTGGGGATCCGTATTGTCAGGGCTTTCGATTCGGTCTGATGCACCGGCCATTGTTGAAGAATGCAAGGATATACCACAAACATTTGACCATGCAGCAGCTGCCGGAGACGAGAAAAGCGACGGGAAAATGCAGAAAGCTGCATCGCAGAATTCCGAAAAATCGGATGCGTTTGAGCCACCATCTTTCACGACACTGGTCGAACAGGGTGAAGGGGACGGGCCAAACGCATCGGATTCCAAGAATCAAAACACAAAAGAGCCACAAGCCGGATGGTTTCCTTCTTTTACTCCTGATCCGAGTGATTTGGATGGTAGAAAAAAGAATGAAGAACTCATTGCCAAGGTGACGAACTGGAAGGCCGGAAAGCAACACACCCCACTGAAAAATCTGCTCGGCGAGGCCGCCCTCGAAGCCAAACCGAAGTTGCCAAAGCCAGAAAATTTACATCCTCCAGTTCAAAACGATGAAAAAACAGCAAAGAACAAAGGTGGGACAATAAACTCCAGTCTGGGGCTGGACTCTCCGACCACCGGGGAGAGTGCAAAGAAAACGAGCGAGAAAGAGTGGGATTCTCCGGCGAGGCTACCGGAGGAGATCAAGAAGGAGAAGAAGAAAGGGAAGGGAAGACCATACTGGGCACAATTTGTATGCTGCACGTCTGCAAATTACTAA 2541 44.75 MENQDQRKIHAPENHGGVHLCHKCGWPFPNPHPSARHRRAHKRVCGKIEGHKLIDSEGSNHSTLSDDEHASDDDNKNPIIVETVKTEKGIDESKEKLKRSEEDVFSDAVADFSESKLAGNTKDSASISEIDKKEELTSSQSFKDCEISDLVQLPSTLSDNIELHKPEVGQSAIDELEAGAENTPSQQSPNFPTDIYIDRENMDSQSNVAVETNKPELKIEEIIERASDPIATEEVVRLKEGHRACIDPEIPQADMASEVAAKSCSSDYLVESNDGGGEEDRNKNVHTVSVLDDLNISDHSEALLKDFKDHKGVKVQQPENTDSIKGMEEGEDKSFLCKPLDEIPVREPDATEMKFIDSDNPKEEQEIDRIPKGSFPVDCTSNFSEVAFVVEDAPREGFDLSDICKENPDTKIEEMKRLELEHLPMVEELPETDRKDTDCVSESSTIVINSNAHDGKMEPENSKPILGPVNDESLIHSSATMEDNISAEVGGAVLISKPLQVEGNNIIEEMKGLEEEHLPMVEELPETDRKDIDCVSESSTIVINSSTHDGKMEPDNLKPFLGPVNGESLIHSSATMEDNISAEVGEAVLISEPLQVEGNNIIDKPVIDVLADSSSQADSVEATWGSVLSGLSIRSDAPAIVEECKDIPQTFDHAAAAGDEKSDGKMQKAASQNSEKSDAFEPPSFTTLVEQGEGDGPNASDSKNQNTKEPQAGWFPSFTPDPSDLDGRKKNEELIAKVTNWKAGKQHTPLKNLLGEAALEAKPKLPKPENLHPPVQNDEKTAKNKGGTINSSLGLDSPTTGESAKKTSEKEWDSPARLPEEIKKEKKKGKGRPYWAQFVCCTSANY 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51242473 51245921 + Bma015829.1 Bma02g01012 78262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01012 846 MobiDBLite consensus disorder prediction 745 832 - -
Bma02g01012 846 MobiDBLite consensus disorder prediction 803 832 - -
Bma02g01012 846 MobiDBLite consensus disorder prediction 691 713 - -
Bma02g01012 846 MobiDBLite consensus disorder prediction 762 779 - -
Bma02g01012 846 MobiDBLite consensus disorder prediction 781 802 - -
Bma02g01012 846 MobiDBLite consensus disorder prediction 667 681 - -
Bma02g01012 846 MobiDBLite consensus disorder prediction 656 731 - -
Bma02g01012 846 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Bma02g01012 846 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 845 - -
Bma02g01012 846 MobiDBLite consensus disorder prediction 51 77 - -
Bma02g01012 846 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 845 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01012 - - - mesc:110615188 368.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01012 Bma-Chr2:51242473 Bma06g01397 Bma-Chr6:50758278 6.36E-88 dispersed
Bma02g01008 Bma-Chr2:51188821 Bma02g01012 Bma-Chr2:51242473 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1027 . . . . . . . . . . Cma06g01604 Cma14g01529 Car06g01363 Car14g01355 Sed02g1077 . Cpe03g01286 Bhi01g01170 Tan10g1172 Cmetu07g1670 . Hepe05g1312 . Lcy11g1276 . . . . . . . . . Cone18ag0908 Cone11ag0597 . . . Cme06g00862 . . . . . . Bma02g01012 . . . Cmo14g01563 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003388 1 1 0 3 0 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 11 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g01012 Bma_Chr02 FPKM 5.338905 3.693448 6.350421 6.346291 6.978142 9.525229 7.655524 11.661965 10.645607 10.441615