Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01042 ATGCGGAGCTCGAGCCAGAATCAGGGTCTTACGGCGGAACCCGTTGATGAGTCGCCTTTACTCGGTCATTCCATCGCCGATAACATCCTCCGTAGCCGCCGCTTCATTCGCCACCCACCGCAGACTCTGCGCGGTGCGGCGAGGTTCCTCCGACGCGCCAGTGGGCGGCGAATGATGCTCCGGGAGCCCTCCGTTTTGGTCCGCGAGACGGCGGCGGAGCAGCTCGAGGAGCGGCAAAGCGACTGGGCCTACTCGAAACCCATCATTGTTTTGGATATTCTATGGAATTTAGCCTTCGCTGGCGTCGGGTTTACGGTTTTGTCTCTTAGCCTGAATGAAAACCCTTCTGTTCCTTTGAGGCTATGGATTATTGGGTATGCTTTGCAGAGTATAGTTCACATGTCGTGCGTTCTTGCTGAGTATAGACTACGGAGACGGGCGAGATTGGTGAATTCTAATGGAAGCTGGGAAAGTGGTGCGGATTCGAATTCATTTTCTGGTAGCGATGGGGAGGATTATGCTATGGATGAACAGCAGAATCATGGCGATCCAGGTCTTACAAAGCATATCATGTCTGCAAATACGATGTTTTCATTCATTTGGTGGATAGTAGGATTCTACTGGGTAACTGCCGGAGGCGAATCTTTGACCAGTGACTCACCTCAGCTCTACTGGTTATGTATTACATTCCTCGCGTTCGATGTGGTGTTCGTTCTTATATGCGTAGCTATTGCTTGTCTTGTCGGTATTGCTGTTTGCTGCTGTCTGCCTTGCATAATTGCTATATTATATGCTGTCACTGATCAGGACGGTGCGACAATGGAAGAAATCGATCAACTACCCAAGTACAAGTTCCACAGGCAAGTGGATCCCGACAAAGTTGATGGAGAGATTCAAGAATCCATGGGAGGGATAATGACCGAATGTAACTCAGATTCCCCTATTGAACGTCCTCTTTCTCAGGAAGATGCTGAATGTTGTATCTGCCTATGCGCATACGACAACGGAACAGAACTCCGCCAGCTCCCTTGCAATCACCATTTCCACAGCTCGTGCGTGGACAAATGGCTGCACATAAACGCCACCTGCCCCCTCTGCAAGTTCAACATTTTGAAGCGAGGCGATCAAAGCAGCACCGAACAAGTATGA 1149 50.04 MRSSSQNQGLTAEPVDESPLLGHSIADNILRSRRFIRHPPQTLRGAARFLRRASGRRMMLREPSVLVRETAAEQLEERQSDWAYSKPIIVLDILWNLAFAGVGFTVLSLSLNENPSVPLRLWIIGYALQSIVHMSCVLAEYRLRRRARLVNSNGSWESGADSNSFSGSDGEDYAMDEQQNHGDPGLTKHIMSANTMFSFIWWIVGFYWVTAGGESLTSDSPQLYWLCITFLAFDVVFVLICVAIACLVGIAVCCCLPCIIAILYAVTDQDGATMEEIDQLPKYKFHRQVDPDKVDGEIQESMGGIMTECNSDSPIERPLSQEDAECCICLCAYDNGTELRQLPCNHHFHSSCVDKWLHINATCPLCKFNILKRGDQSSTEQV 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51943709 51946176 - Bma015860.1 Bma02g01042 78292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01042 382 SUPERFAMILY RING/U-box 318 372 - -
Bma02g01042 382 CDD RING-H2_RNF111_like 325 369 - -
Bma02g01042 382 Pfam Ring finger domain 325 367 IPR001841 -
Bma02g01042 382 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Bma02g01042 382 SMART ring_2 326 366 IPR001841 -
Bma02g01042 382 PANTHER TARGET OF ERK KINASE MPK-1 7 377 - -
Bma02g01042 382 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 377 - -
Bma02g01042 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 376 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01300 Bma-Chr1:17778344 Bma02g01042 Bma-Chr2:51943709 4.92E-52 dispersed
Bma02g01042 Bma-Chr2:51943709 Bma05g00809 Bma-Chr5:45420274 1.08E-145 dispersed
Bma02g01042 Bma-Chr2:51943709 Bma12g00096 Bma-Chr12:1629114 8.58E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01042 - - qsu:111991620 560.066