Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01044 ATGAGTTTTGGGGGTTTCCTCGATAATCCTCACGGTTCTGGTGGCGGTGGTGCAAGAATCGTCGCCGATTTGCCTTTTGCCACCAGCAACGGCGAAACAGCCATTAATATGGCTTCAACCACAATTGCTCAGCCTCGCCTTCTTTCTCAGACTCTAACGAAATCCATTTTCAACTCTCCTGGCCTCACTTTAGCTCTTACTGACATTGATGGGCAAGGAGATATGGCTGCTAGATTGGCTGAGACTTTAGAGCCCAATCTTGGCAGAAGAAGCAGAGATGAAGAGCACGAGAGCAGATCTGGCAGCGATAACGTCGATGGTGGTTCCGGCGACGATCTAGACGCCGCCGATAATCGGCCGAGGAAGAAGAGATATCACCGTCACACTCCTCAGCAAATCCAAGAACTTGAAGCTCTGTTTAAGGAGTGCCCTCATCCTGATGAGAAACAAAGATTGGAGCTCAGTAAAAGGCTTTCATTGGAAACCAGACAGGTCAAATTCTGGTTTCAGAATCGTCGAACGCAAATGAAGACTCAATTGGAACGCCATGAAAACACCTTGTTGCGGCAGGAAAACGATAAGCTAAGAGCGGAAAACATGTCCATCCGAGATGCCATGAGAAATCCGATGTGCTCGAACTGTGGCGGCCCTGCAATTATCGGAGAAATCTCGCTGGAAGAGCAGCATCTGAGGATTGAGAATGCACGATTGAAGGACGAGCTAGACCGTGTCTGTGCACTCGCCGGAAAGTTTCTGGGTCGTCCCATTTCGTCTCTGACTTCACCCATTGCACCTCCATTGCCAAGCTCAAGCTTAGAGCTCGGAGTCGGGAGCAATATTGGGTATGGTGGCTTGAGCAGTGTGTCTACGACCATGGCTATGGGGCAAGAATTTGGAGGTGGGATTTCCAGCAATTTACCAATCATGCCTCCGAGAACATCTGGCGGTATAATGGGGCTCGACAGGTCCATCGAGAGGTCCATGTTTCTCGAGCTCACGTTGGCTGCCATGGACGAACTGGTTAAGATGGCACAGACCGATGAGCCTCTCTGGATTAGAAGCTCGGAAGGCGGAAGAGAATTGTTGTTAAACCACGAAGAGTACATTAGAGCTTTCACTCCTTGCATCGGATTAAAACCGAACGGGTTCGTCGCGGAAGCATCGAAAGAAACTGTAATGGTTCTAATCAACAGCTTGGGTCTTGTTGAGACAATGATGGATTCAGCTCGATGGGCGGAGATGTTTCCATGTATGATTGCAAGAACATCGACAATCGATGTCATTTCGAGTGGAATGGGCGGAACAAGAAATGGTGCCCTTCAATTGATGCACGCAGAGCTGCAAGTTCTATCGCCATTGGTTCCAGTTAGGGAGGTAAACTTCATTCGCTTCTGCAAGCAGCTTGCAGAAGGAGTATGGGCAGTGGTCGACGTCTCCATTGACAGCCTGAGAGAAGCTCCTGCATTCTACAACTGCCGAAGGCTTCCTTCCGGCTTCATAGTTCAAGATATGTCAAATGGGTGTTCCAAGGTTACGTGGGTGGAGCATGCAGAATACGATGAAAGCCAAGTTCACCAGCTCTACCGCCCCCTTCTTTGCTCCGGCATGGCCTTCGGCGCACGGCGGTGGGTGGCCACTCTCCAGCGACAGTGCGAGTGTCTTGACATTCTCATCTCCTCCGCCAATCCCTCGCGCGATCACGCTGCGATTACTTCCGGTGGCCAGAGAAGCATGCTGAAGCTGGCGCAGAGGATGACGGACAACTTCTGTGCTGGAGTTTGTGCTTCGACGGTGCACAAGTGGAACAAACTCAATGCTGGAAATGTGGACGAGGACGTTCGGGTGATGACCCGGAAGAGCGTGGATGATCCGGGAGAGCCGCCGGGGGTTGTGCTTAGCGCCGCCACCTCCGTCTGGCTCCCCGTTTCTCCTCAGAGACTGTTTGACTTTCTGCGCGATGAACGGCTGAGGAGCGAGTGGGATATTTTATCTAACGGTGGTCCGATGCAGGAGATGGCTCACATCGCCAAAGGCCAAGATCACGGCAACTGCGTGTCTCTCCTCCGAGCCAGCGCTATGAACGCAAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGTATAGATGCGGCTGGATCGCTGGTGGTGTACGCGCCGGTGGACATCCCGGCAATGCACGTGGTGATGAACGGCGGAGATTCTGCTTACGTGGCTCTACTCCCGTCTGGATTTGCAATCGTCCCCGATGGGCCGGGCACCCGCGGTGGGTCCACCACCGGCGGTAGTCCCAATGGCGGAGAGGGCCCACGCAGAGTGAGTGGGTCTCTGCTGACGGTGGCATTCCAGATTCTCGTGAATAGCTTGCCTACGGACAAGCTCACGGTAGAATCGGTGGAAACGGTCAACAATTTAATCTTCTGCACCGTTCAGAAGATCAAGGCCGCTCTTCAATGCGAAAGCTGA 2463 52.5 MSFGGFLDNPHGSGGGGARIVADLPFATSNGETAINMASTTIAQPRLLSQTLTKSIFNSPGLTLALTDIDGQGDMAARLAETLEPNLGRRSRDEEHESRSGSDNVDGGSGDDLDAADNRPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTSPIAPPLPSSSLELGVGSNIGYGGLSSVSTTMAMGQEFGGGISSNLPIMPPRTSGGIMGLDRSIERSMFLELTLAAMDELVKMAQTDEPLWIRSSEGGRELLLNHEEYIRAFTPCIGLKPNGFVAEASKETVMVLINSLGLVETMMDSARWAEMFPCMIARTSTIDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFIRFCKQLAEGVWAVVDVSIDSLREAPAFYNCRRLPSGFIVQDMSNGCSKVTWVEHAEYDESQVHQLYRPLLCSGMAFGARRWVATLQRQCECLDILISSANPSRDHAAITSGGQRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGTRGGSTTGGSPNGGEGPRRVSGSLLTVAFQILVNSLPTDKLTVESVETVNNLIFCTVQKIKAALQCES 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51980717 51985433 - Bma015862.1 Bma02g01044 78294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01044 820 Coils Coil 173 205 - -
Bma02g01044 820 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 67 817 - -
Bma02g01044 820 SMART HOX_1 120 183 IPR001356 GO:0003677
Bma02g01044 820 ProSiteProfiles START domain profile. 322 556 IPR002913 GO:0008289
Bma02g01044 820 MobiDBLite consensus disorder prediction 82 129 - -
Bma02g01044 820 Pfam Homeodomain 122 177 IPR001356 GO:0003677
Bma02g01044 820 SUPERFAMILY Homeodomain-like 106 179 IPR009057 -
Bma02g01044 820 CDD START_ArGLABRA2_like 326 552 - -
Bma02g01044 820 MobiDBLite consensus disorder prediction 85 102 - -
Bma02g01044 820 Pfam START domain 332 553 IPR002913 GO:0008289
Bma02g01044 820 SUPERFAMILY Bet v1-like 324 553 - -
Bma02g01044 820 SMART START_1 331 553 IPR002913 GO:0008289
Bma02g01044 820 CDD homeodomain 121 179 IPR001356 GO:0003677
Bma02g01044 820 Gene3D - 110 195 - -
Bma02g01044 820 SUPERFAMILY Bet v1-like 581 813 - -
Bma02g01044 820 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Bma02g01044 820 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 817 IPR042160 -
Bma02g01044 820 MobiDBLite consensus disorder prediction 750 769 - -
Bma02g01044 820 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01044 Bma04g01080 CCT
Bma02g01044 Bma05g00972 CCT
Bma02g01044 Bma04g01080 ECH
Bma02g01044 Bma05g00972 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01044 Bma-Chr2:51980717 Bma06g01236 Bma-Chr6:49558018 0 dispersed
Bma10g01213 Bma-Chr10:42937910 Bma02g01044 Bma-Chr2:51980717 0 dispersed
Bma02g01044 Bma-Chr2:51980717 Bma05g00972 Bma-Chr5:48169367 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56910 PF01852 START 2.00E-51 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01044 K09338 - qsu:111991611 1288.48