Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01062 ATGGATCGGAGGGACCCTTTAGCGTTATCGGCATCGCAATCGTTCTATATGCAGAGAGGAATAATTGGTTCTGTCACAAACCCTCATTCTGGATTACAAGGGCCTCAAGCCCTTCGATCGATAACGAGCCAAACAAGCCAAACAGGGAACGTTCAGTCCAATGTTGGAGGAAACACCATGGGATCGACATTACAGGTTGACCATTCCCAATCAATTACCCGTCATACAGTCGATTTCGGTGGACAATCAGTAATGGCATCGGCCGAGCCGATGAAAAGAAAGCGGGGGAGGCCTCGGAAGTATGGACAGGATGGAAATGTCTCGTTGGCTCTGTCCCCATCTGCATCGCCCAATCATGGAATGGTGTCGCCTGTCTTAAAGCGAGGAAGAGGTCGACCTCCTGGAACGGGAAGGAAACAACAATTAGCTTCTCTCGGCGAATGGCTTTCTGGGTCTGCTGGGGTGGGTTTCACTCCCCATATTATCTCTATTGGAGTAGGAGAAGACATTGCTGCAAAAGTTGTGTCGTTTTCCCAGCAGGGGCCGAGAGCTATATGCATTTTATCGGCCAGTGGTGCTGTTTCCACTGTCACTCTTCGTCAGCCTTCGACTTCCGGTGGCACTGTCACATATGAGGGACGGTTTGAGATTGTATGTTTGTCGGGGTCGTACCTGCTCGACGACAACACTGGATCGCGGGGCCGAAGCGGCAGCTTAAGTGTCTCCCTTGCCAGTCCTGATGGCCATGTGATTGGTGGGACGGTCGGTGGAGTTCTTATTGCTGCAACCCCTGTTCAGGTGATTCTGGGAAGCTTCATGTGGGGTGGATCGAGAACTAAGAACAAACGAAGGGAAGCCTTAGAAGGCGTGATAGACTCCGACCAACAGACAACGGAGAATTTGACCGGGGCTGCTGAACAATTGGAGAAGAAAAGGGCAGAATATGGGGAGAAAATGAAGAACAAAGTAGCTGTGATTCGCAAAGAAGCAGCAGAAAAGAAGGCAACAGTGGAAGCTCAACGCGCAGAGCAAATCCTGAAAGCAGAAGAGACTGCTGCTAAATATCGCGCAACTGGGCAAATTCCAAAGAGACTTTTAGGATGCTTCTGA 1110 50.27 MDRRDPLALSASQSFYMQRGIIGSVTNPHSGLQGPQALRSITSQTSQTGNVQSNVGGNTMGSTLQVDHSQSITRHTVDFGGQSVMASAEPMKRKRGRPRKYGQDGNVSLALSPSASPNHGMVSPVLKRGRGRPPGTGRKQQLASLGEWLSGSAGVGFTPHIISIGVGEDIAAKVVSFSQQGPRAICILSASGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLLDDNTGSRGRSGSLSVSLASPDGHVIGGTVGGVLIAATPVQVILGSFMWGGSRTKNKRREALEGVIDSDQQTTENLTGAAEQLEKKRAEYGEKMKNKVAVIRKEAAEKKATVEAQRAEQILKAEETAAKYRATGQIPKRLLGCF 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52212006 52215868 + Bma015878.2 Bma02g01062 78312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01062 369 Coils Coil 291 325 - -
Bma02g01062 369 MobiDBLite consensus disorder prediction 85 141 - -
Bma02g01062 369 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 312 - -
Bma02g01062 369 ProSiteProfiles PPC domain profile profile. 153 294 IPR005175 -
Bma02g01062 369 CDD DUF296 158 272 IPR005175 -
Bma02g01062 369 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 312 IPR039605 GO:0003680
Bma02g01062 369 Gene3D - 159 292 - -
Bma02g01062 369 Pfam Remorin, C-terminal region 298 363 IPR005516 -
Bma02g01062 369 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 274 - -
Bma02g01062 369 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 272 IPR005175 -
Bma02g01062 369 SMART AT_hook_2 92 104 IPR017956 GO:0003677
Bma02g01062 369 SMART AT_hook_2 127 139 IPR017956 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01062 Bma-Chr2:52212006 Bma05g00817 Bma-Chr5:45468933 2.24E-79 dispersed
Bma14g00147 Bma-Chr14:2089797 Bma02g01062 Bma-Chr2:52212006 1.35E-33 dispersed
Bma14g02086 Bma-Chr14:44254215 Bma02g01062 Bma-Chr2:52212006 1.15E-23 dispersed
Bma14g02091 Bma-Chr14:44306848 Bma02g01062 Bma-Chr2:52212006 1.74E-22 dispersed
Bma07g00961 Bma-Chr7:36479208 Bma02g01062 Bma-Chr2:52212006 1.48E-33 transposed
Bma02g01062 Bma-Chr2:52212006 Bma06g01189 Bma-Chr6:48961601 2.00E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01062 - - qsu:112035696 388.652