Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01102 ATGGAATTTGATGGCATTGAAAGCTTGCCATCTTCGGATGCGATAGATGAGGCCGAGATCCATCAACATCATCGTCAGTTTTCTTCGATTTCGAAGCCTCACACCGTCAACAACTCTAATTGTCACCTTACTGGCACCAATGTTCACGAGCTTCTTGAATGCCCCGTCTGTACTAATTCTATGTACCCTCCAATTCATCAGTGCCATAATGGACATACCCTTTGTTCAACCTGCAAAACGAGGGTGCACAATCGATGCCCGACGTGTAGACAAGAGCTGGGCGACATAAGGTGTCTGGCATTGGAAAAAGTAGCCGAATCACTCGAATTACCTTGCAAATACTGTTCGTTGGGATGCCCGGAGATATTTCCCTACTACAACAAGCTTAAACACGAATCTGTGTGTAGTTTTAGACCCTACAACTGTGTGTTCCACTGCTTTGGTCAATACTTCTGTCTCCATTTCGAAGCATTCCAGCTCGGGATGGCTCCGGCTTACATGGCCTTTCTCCGGTTCATGGGCAGTGAAGCAGACGCCAGGAACTACAGCTACAGCCTGGAAGTTGGGGGAAGTGGGAGGAAACTCATCTGGGAGGGGAACCCCAGAAGCATAAGAGACAGTCACGAGAAGGTTAGGGACAGCCACGACGGCTTGATCATTCAGCGTAATATCGCACTTTTCTTCTCCGGCGGGGACAGGAAAGAGCTGAAGCTCCGAGTGACCGGCCGGATATGGAAAGAACAGGCCAACTCGGAAGGCGGGCCCTGCATACCTATCCTATTTAGTTAG 789 49.3 MEFDGIESLPSSDAIDEAEIHQHHRQFSSISKPHTVNNSNCHLTGTNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYNKLKHESVCSFRPYNCVFHCFGQYFCLHFEAFQLGMAPAYMAFLRFMGSEADARNYSYSLEVGGSGRKLIWEGNPRSIRDSHEKVRDSHDGLIIQRNIALFFSGGDRKELKLRVTGRIWKEQANSEGGPCIPILFS 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52688346 52691033 - Bma015921.1 Bma02g01102 78352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01102 262 CDD RING-HC_SIAHs 52 90 - -
Bma02g01102 262 SUPERFAMILY RING/U-box 39 94 - -
Bma02g01102 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Bma02g01102 262 ProSiteProfiles Zinc finger SIAH-type profile. 107 160 IPR013010 GO:0008270
Bma02g01102 262 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Bma02g01102 262 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 143 252 - -
Bma02g01102 262 Pfam Seven in absentia protein family 143 241 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bma02g01102 262 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 143 - -
Bma02g01102 262 SUPERFAMILY TRAF domain-like 107 245 - -
Bma02g01102 262 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 143 252 - -
Bma02g01102 262 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 138 241 IPR008974 GO:0005515
Bma02g01102 262 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01102 Bma-Chr2:52688346 Bma12g01203 Bma-Chr12:44963733 1.45E-69 dispersed
Bma02g01102 Bma-Chr2:52688346 Bma06g01156 Bma-Chr6:48463528 9.26E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01102 K04506 - dcr:108224562 411.764