Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma02g01104 | ATGAATTTGGTGGAGGATTTGGGCGGCTGCGTGTGGAATGTGGAGGAAAAGAGCATGGTGGATGCTGTACTGAGCAGTGAAGCCTTCGAGTACTTGATAACCAGCTCGTTTTCTGATGCCAGTATATCAATGACGCTAGGGAGTGACGAGAATTTACAAAACAAGCTTTCTGATTTGGTAGACCGTCCAAACGCGTTCAATTTCAGCTGGAACTACGCCATTTTCTGGCAAATCTCGCAGTCGAAATCCGGCGACGTGGTTTTGGGATGGGGGGATGGGTGTTGCAGAGAGCCAAGAGAAGGCGAAGAGTCAGAATCTTCGGGAATTCTGAGTCTTAACGTAGGAGACGAAATGCAGCAGACAATGAGGAAGACGGTCCTTCAGAAACTCCACACGTTGTTCGGAGGATCCGATCAAGATAATTACGCTCACGCATTAGGTAGAGTGACTGATACAGAGATCTTCTTCCTCGCTTCAATGTACTTCTCTTTTCCTCCCGGAGAAGGGGGGCCTGGTAAGTGTTTTTCTTCTGCAAAACACGTCTGGCTCGTCAATTTACTCCAATCTCAATCCGATTACTGTGTTCGATCATTTTTGGCTAAATCAGCTAGAATCAGTACTGTTGTTTTAGTACCTACTGATGTCGGCGTAGTCGAAATTGGTTCTGTGAGATCGGTTTCTGAGAGCTTAGACTTGGTCCATTCAATCAGAACCTTATTTTCCTCGCAGCCTTGTTATTTCGACAGACTGAAACCGCCATTGGCGACGGAGGAGAAGAAAGGAGTTTCTAGTCTGGATTTGAGTTGCGTGGAAACAGGTCGATCCTATGTCAGAGAGAAGCCTGAGTTTTGGGAAGGTTGTGTTAATGGCGGCGGAATTGTAGTTCAGAGCCAACATCAAAATGAGATGCATACTTCCAGTTGGGGTATGCACGGGCTTAAACAGGGGAGCTCCGGCGAAGTTTACGTTTGGCCGAGATTAAACACTATGCAGCAACGGCAACAGCTTGTTAATGGCGGCAGAGAAGACTTCCTGGTTGGAAATTATCAACAGCAAAAGCAAGTCCATCAAATGCAGATTGATTTTTCAGGGGCAACTTCAAGGCCGTCTGTGATATCGAGAGCAGAATCTGGGCATTCGAACCCAGAACCTTCCGGCAAAGAAGATGAAAGTCGGCCGAGAAAGCGAGGGAGAAAGCCTGCAAACCGGCGGGAAGAGCCACTCAACCACGTCGAAGCAGAGAGACAGCGGAGGGAGAAACTCAACCAAAAATTCTACGCCTTACGAGCCGTCGTCCCAAACATCTCTAAAATGGATAAAGCCTCTTTGTTAGGAGACGCCATTGATTACATAAACGAGCTTCAAGCTAAGATCAAAGCCATGGAAATGGGCAACAGTTCGAACCCAAATGCAGAAAACCAAAACCCAGTTTCTCAGCTGGATATTGAATCTTCGAGTGATGAGATAATTGTCAGATTGAGCTCCCCATTGGAGCTACATCCTGCATTTAAACTCATTCAAGCATTTAAACAGTCGCAGGTGACTGTGATAGACTCCAAACTCTCTGCAGCAGAAGATACAGTTTTTCATAGTTTTGTGATACAATCTCAAGGATCTGAGCAGCTAACTAAGGAGACGTTAATGGCTGCCTTCTTCCCATGA | 1662 | 46.33 | MNLVEDLGGCVWNVEEKSMVDAVLSSEAFEYLITSSFSDASISMTLGSDENLQNKLSDLVDRPNAFNFSWNYAIFWQISQSKSGDVVLGWGDGCCREPREGEESESSGILSLNVGDEMQQTMRKTVLQKLHTLFGGSDQDNYAHALGRVTDTEIFFLASMYFSFPPGEGGPGKCFSSAKHVWLVNLLQSQSDYCVRSFLAKSARISTVVLVPTDVGVVEIGSVRSVSESLDLVHSIRTLFSSQPCYFDRLKPPLATEEKKGVSSLDLSCVETGRSYVREKPEFWEGCVNGGGIVVQSQHQNEMHTSSWGMHGLKQGSSGEVYVWPRLNTMQQRQQLVNGGREDFLVGNYQQQKQVHQMQIDFSGATSRPSVISRAESGHSNPEPSGKEDESRPRKRGRKPANRREEPLNHVEAERQRREKLNQKFYALRAVVPNISKMDKASLLGDAIDYINELQAKIKAMEMGNSSNPNAENQNPVSQLDIESSSDEIIVRLSSPLELHPAFKLIQAFKQSQVTVIDSKLSAAEDTVFHSFVIQSQGSEQLTKETLMAAFFP | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 52722018 | 52723679 | - | Bma015923.1 | Bma02g01104 | 78354 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma02g01104 | 553 | PANTHER | MYC | 299 | 551 | IPR045084 | GO:0003700|GO:0006355 | |
| Bma02g01104 | 553 | PANTHER | MYC | 8 | 290 | IPR045084 | GO:0003700|GO:0006355 | |
| Bma02g01104 | 553 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 52 | 240 | IPR025610 | - | |
| Bma02g01104 | 553 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 408 | 469 | IPR036638 | GO:0046983 | |
| Bma02g01104 | 553 | MobiDBLite | consensus disorder prediction | 365 | 417 | - | - | |
| Bma02g01104 | 553 | MobiDBLite | consensus disorder prediction | 381 | 417 | - | - | |
| Bma02g01104 | 553 | Pfam | Helix-loop-helix DNA-binding domain | 409 | 455 | IPR011598 | GO:0046983 | |
| Bma02g01104 | 553 | PANTHER | TRANSCRIPTION FACTOR MTB1 | 299 | 551 | - | - | |
| Bma02g01104 | 553 | PANTHER | TRANSCRIPTION FACTOR MTB1 | 8 | 290 | - | - | |
| Bma02g01104 | 553 | SMART | finulus | 411 | 460 | IPR011598 | GO:0046983 | |
| Bma02g01104 | 553 | MobiDBLite | consensus disorder prediction | 365 | 380 | - | - | |
| Bma02g01104 | 553 | CDD | bHLH_AtAIB_like | 402 | 463 | - | - | |
| Bma02g01104 | 553 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 405 | 454 | IPR011598 | GO:0046983 | |
| Bma02g01104 | 553 | Gene3D | - | 396 | 469 | IPR036638 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma02g01104 | Bma06g01154 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma02g01104 | Bma-Chr2:52722018 | Bma10g00424 | Bma-Chr10:4463780 | 6.48E-63 | dispersed | |
| Bma12g00210 | Bma-Chr12:2755073 | Bma02g01104 | Bma-Chr2:52722018 | 1.42E-18 | dispersed | |
| Bma02g01104 | Bma-Chr2:52722018 | Bma04g00924 | Bma-Chr4:12939830 | 2.00E-16 | wgd | |
| Bma02g01104 | Bma-Chr2:52722018 | Bma06g01154 | Bma-Chr6:48458751 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 56913 | PF14215 | bHLH-MYC_N | 2.10E-52 | CL0161 | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma02g01104 | - | - | qsu:111989355 | 639.417 |