Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01115 ATGGCTTCAGATCCACGAGTTTATACTTTTGGTGAAGTGGGCAAGCATAATCATAAGAAGGATTGCTGGCTTATCATCGCTGGAAAGGTGTACGATGTGACCCCGTTTCTCGAGGAACATCCGGGAGGTGATGAAGTCTTGCTTTTATCCGCGGAGAAAGATGCGACGGATGATTTCGAAGATGTTGGGCACAGCGATTCGGCTCGAGAGATGATGGAGAAATACTACGTTGGTGAATTGGACGAGTCTAGTCTTCCGAAGAAACAGAATTTCAGCTCGCCTTCGACTGCTCAAGCAGCTCAAACCGTCCACCCGTCTCCCGGAGCTTTCCGGGCGAGAGTGTTTCAAATCCTGACCTTCATTGTGGTGTTGGGACTGGCTTTTGCTCTGCAATATTTTGGCAAGAAGAAAGAATGA 417 48.2 MASDPRVYTFGEVGKHNHKKDCWLIIAGKVYDVTPFLEEHPGGDEVLLLSAEKDATDDFEDVGHSDSAREMMEKYYVGELDESSLPKKQNFSSPSTAQAAQTVHPSPGAFRARVFQILTFIVVLGLAFALQYFGKKKE 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52832338 52833606 + Bma015936.1 Bma02g01115 78365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01115 138 MobiDBLite consensus disorder prediction 85 103 - -
Bma02g01115 138 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Bma02g01115 138 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Bma02g01115 138 SMART Cyt_b5_2 8 81 IPR001199 -
Bma02g01115 138 PANTHER - 1 135 - -
Bma02g01115 138 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Bma02g01115 138 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Bma02g01115 138 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Bma02g01115 138 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Bma02g01115 138 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 91 IPR036400 -
Bma02g01115 138 Gene3D - 1 86 IPR036400 -
Bma02g01115 138 PANTHER CYTOCHROME B5 1 135 - -
Bma02g01115 138 MobiDBLite consensus disorder prediction 84 103 - -
Bma02g01115 138 Pfam Cytochrome b5-like Heme/Steroid binding domain 12 80 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01115 K23490 CYB5; cytochrome b5 - zju:107406738 184.496
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01115 Bma-Chr2:52832338 Bma14g02023 Bma-Chr14:43583012 6.41E-56 dispersed
Bma02g01115 Bma-Chr2:52832338 Bma02g01207 Bma-Chr2:54131300 5.35E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g02023 . 1 134 NADPH P450 reductases AT5G53560 82.1 4.8e-62 233.8
Bma06g01286 . 4 137 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma06g01305 . 1 134 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G53560 68.7 5.9e-52 200.3
Bma02g01115 . 1 136 NADPH P450 reductases AT5G53560 54.4 2.9e-38 154.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G48810 63.2 9.9e-50 193.0
Bma06g01286 . 4 137 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma06g01305 . 1 134 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma14g02023 . 1 134 NADPH P450 reductases AT5G48810 61.8 6.0e-47 183.7
Bma02g01207 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.5e-50 193.0
Bma06g01286 . 25 136 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma06g01305 . 22 133 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma14g02023 . 22 133 NADPH P450 reductases AT2G32720 67.0 4.0e-40 161.0
Bma10g00255 BCT 2 281 NADPH P450 reductases AT5G17770 81.8 8.4e-133 469.9
Bma04g01430 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 3.2e-132 468.0
Bma07g00307 . 7 302 NADPH P450 reductases AT5G17770 68.6 3.0e-114 408.3
Bma14g02023 . 1 134 NADPH P450 reductases AT5G53560 82.1 4.8e-62 233.8
Bma06g01286 . 4 137 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma06g01305 . 1 134 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G53560 68.7 5.9e-52 200.3
Bma02g01115 . 1 136 NADPH P450 reductases AT5G53560 54.4 2.9e-38 154.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G48810 63.2 9.9e-50 193.0
Bma06g01286 . 4 137 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma06g01305 . 1 134 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma14g02023 . 1 134 NADPH P450 reductases AT5G48810 61.8 6.0e-47 183.7
Bma02g01207 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.5e-50 193.0
Bma06g01286 . 25 136 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma06g01305 . 22 133 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma14g02023 . 22 133 NADPH P450 reductases AT2G32720 67.0 4.0e-40 161.0
Bma10g00255 BCT 2 281 NADPH P450 reductases AT5G17770 81.8 8.4e-133 469.9
Bma04g01430 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 3.2e-132 468.0
Bma07g00307 . 7 302 NADPH P450 reductases AT5G17770 68.6 3.0e-114 408.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g01115 Bma_Chr02 FPKM 1.348889 1.5996 53.492271 52.95787 44.752964 44.932114 46.068516 21.308989 20.216724 20.250059