Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01147 ATGGTGAGAGGAAAGACTCAGCTGCGTCGAATAGCAGACAATACGAGCCGACAGGTTACGTTTTCGAAACGACGACAAGGATTGCTGAAGAAGGCGTTTGAGCTCTCTGTTCTTTGCGATGCAGAGATAGCTCTCATCGTCTTCTCTCCCAAAGGAAAGCTCCATGAATTTGCAAGCTCTGGCACCATGCAAAAGACGATAGACCGCTACATGAAGCACAACCAAGGCGCTCAAGTCAATTCTAACCTTCTTGAATCGCAGATCCAGTTAAATGAATGTAATAAATGGCAGCGCTTGAAGTGTGAGACTGAGAATATGAAGAAGAAGATGGATGAGCTTGAAGTTTCAAAGAGGAAGCTGTTGGGAGGTTTGACATCCTGCTCTTTGGAAGAACTTCAAAGTACAGAGCAACAGTTGGAGAAGAGCTTAAGCAAAATTAGAGCCAGAAAGACTCAGCTCTTCGAGGAACAAATCCAACAACTCAAAGAGAAGGAAAAATCCCTGGAAGAAGAAAACATTAAGCTACGCGAGAAGGAAATAATCCTAGAAAGTGAAACTACCAGACTATGTGTCAAGTGTGGCCACCAACCACAAAAACCACCAACTGAAAAAGGAGAAAATTTAGCAATCGTCGAAGAAACCAGTTCGATTTCAGACGTGGAGACAACATTATTCATCGGCCGGCCACGAACCCGAGCCGACCCTGCAATCATCACCGATCTAAATTTAGTAGCTGTCGAAGAAACTAGTTGTACCTCATGTGTGGAGACAACATTATTCATCGGACGGCCACAAACACGAACAGTAGCCGGAGCCGGAGCCGGAGCCGGGGCCGGCCAGCAGCCTTTGCCTTTCACTAGCAAGCATATTGTAAGATACATTTAA 885 45.42 MVRGKTQLRRIADNTSRQVTFSKRRQGLLKKAFELSVLCDAEIALIVFSPKGKLHEFASSGTMQKTIDRYMKHNQGAQVNSNLLESQIQLNECNKWQRLKCETENMKKKMDELEVSKRKLLGGLTSCSLEELQSTEQQLEKSLSKIRARKTQLFEEQIQQLKEKEKSLEEENIKLREKEIILESETTRLCVKCGHQPQKPPTEKGENLAIVEETSSISDVETTLFIGRPRTRADPAIITDLNLVAVEETSCTSCVETTLFIGRPQTRTVAGAGAGAGAGQQPLPFTSKHIVRYI 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53390478 53402243 + Bma015981.2 Bma02g01147 78397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01147 294 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma02g01147 294 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Bma02g01147 294 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Bma02g01147 294 Coils Coil 129 185 - -
Bma02g01147 294 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma02g01147 294 ProSiteProfiles K-box domain profile. 96 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma02g01147 294 Pfam K-box region 93 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma02g01147 294 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma02g01147 294 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma02g01147 294 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma02g01147 294 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma02g01147 294 PANTHER MADS-BOX PROTEIN SOC1 1 231 - -
Bma02g01147 294 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma02g01147 294 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Bma02g01147 294 PANTHER MADS BOX PROTEIN 1 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01147 Bma-Chr2:53390478 Bma08g00349 Bma-Chr8:6699243 3.96E-55 dispersed
Bma02g01147 Bma-Chr2:53390478 Bma08g00348 Bma-Chr8:6414917 1.00E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56917 PF01486 K-box 3.20E-22 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01147 - - qsu:112012679 210.69