Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g01147 | ATGGTGAGAGGAAAGACTCAGCTGCGTCGAATAGCAGACAATACGAGCCGACAGGTTACGTTTTCGAAACGACGACAAGGATTGCTGAAGAAGGCGTTTGAGCTCTCTGTTCTTTGCGATGCAGAGATAGCTCTCATCGTCTTCTCTCCCAAAGGAAAGCTCCATGAATTTGCAAGCTCTGGCACCATGCAAAAGACGATAGACCGCTACATGAAGCACAACCAAGGCGCTCAAGTCAATTCTAACCTTCTTGAATCGCAGATCCAGTTAAATGAATGTAATAAATGGCAGCGCTTGAAGTGTGAGACTGAGAATATGAAGAAGAAGATGGATGAGCTTGAAGTTTCAAAGAGGAAGCTGTTGGGAGGTTTGACATCCTGCTCTTTGGAAGAACTTCAAAGTACAGAGCAACAGTTGGAGAAGAGCTTAAGCAAAATTAGAGCCAGAAAGACTCAGCTCTTCGAGGAACAAATCCAACAACTCAAAGAGAAGGAAAAATCCCTGGAAGAAGAAAACATTAAGCTACGCGAGAAGGAAATAATCCTAGAAAGTGAAACTACCAGACTATGTGTCAAGTGTGGCCACCAACCACAAAAACCACCAACTGAAAAAGGAGAAAATTTAGCAATCGTCGAAGAAACCAGTTCGATTTCAGACGTGGAGACAACATTATTCATCGGCCGGCCACGAACCCGAGCCGACCCTGCAATCATCACCGATCTAAATTTAGTAGCTGTCGAAGAAACTAGTTGTACCTCATGTGTGGAGACAACATTATTCATCGGACGGCCACAAACACGAACAGTAGCCGGAGCCGGAGCCGGAGCCGGGGCCGGCCAGCAGCCTTTGCCTTTCACTAGCAAGCATATTGTAAGATACATTTAA | 885 | 45.42 | MVRGKTQLRRIADNTSRQVTFSKRRQGLLKKAFELSVLCDAEIALIVFSPKGKLHEFASSGTMQKTIDRYMKHNQGAQVNSNLLESQIQLNECNKWQRLKCETENMKKKMDELEVSKRKLLGGLTSCSLEELQSTEQQLEKSLSKIRARKTQLFEEQIQQLKEKEKSLEEENIKLREKEIILESETTRLCVKCGHQPQKPPTEKGENLAIVEETSSISDVETTLFIGRPRTRADPAIITDLNLVAVEETSCTSCVETTLFIGRPQTRTVAGAGAGAGAGQQPLPFTSKHIVRYI | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 53390478 | 53402243 | + | Bma015981.2 | Bma02g01147 | 78397 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g01147 | 294 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01147 | 294 | CDD | MADS_MEF2_like | 3 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Bma02g01147 | 294 | SUPERFAMILY | SRF-like | 3 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Bma02g01147 | 294 | Coils | Coil | 129 | 185 | - | - | |
Bma02g01147 | 294 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01147 | 294 | ProSiteProfiles | K-box domain profile. | 96 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma02g01147 | 294 | Pfam | K-box region | 93 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma02g01147 | 294 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01147 | 294 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01147 | 294 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01147 | 294 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01147 | 294 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 231 | - | - | |
Bma02g01147 | 294 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01147 | 294 | Gene3D | - | 13 | 91 | IPR036879 | GO:0003677|GO:0046983 | |
Bma02g01147 | 294 | PANTHER | MADS BOX PROTEIN | 1 | 231 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g01147 | Bma-Chr2:53390478 | Bma08g00349 | Bma-Chr8:6699243 | 3.96E-55 | dispersed | |
Bma02g01147 | Bma-Chr2:53390478 | Bma08g00348 | Bma-Chr8:6414917 | 1.00E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56917 | PF01486 | K-box | 3.20E-22 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g01147 | - | - | qsu:112012679 | 210.69 |