Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01149 ATGGATCAAGTATCAGCACAGGGCCGTCCAATCCTACCACCTTTTCTCTCTAGGGATCTTCATCTCCACCCTCGTCACCAATTCCAGTATCACCAGCAGCAAAACTCTGAAGACGAGCAGAGCGGCAATGGAATCATAAACCACGGCCCGAAAAGAGAGCGAGATGAAAACAACACCTCCTCTACAACGAAGGCCGCCACACCGGAGAGCAAAGAGCTCAGCAACAACGTAGGAGGAGATGGAGAAATCACAAGAAGGCCTAGAGGCAGACCGGCTGGTTCAAAAAACAAGCCTAAACCACCGATCATAATCACTAGAGACAGCGCAAACGCCCTCCGATCTCTCGTCATGGAAATCACCACCGGCTGTGATATTATGGAGAGTATTTCAACCTTCGCAAGAAGAAGACAGAGAGGGATTTGTATTCTGAGTGGAAGTGGAACAGTAACTAATGTCACTCTGAAACAACCAGCTTCTCCCGGAGCAGTGGTCACTCTACATGGAAAATTTGAGATTCTCTCACTTTCCGGCTCGTTTCTGCCACCTCCGGCGCCGGCTGCAGCTTTCGGGTTGACCATTTACTTGGCTGGTGGACAAGGACAGGTGGTCGGAGGAAGTGTGGCTGGGCCGCTTTTAGCTTCAGGGCCGGTGGTTATCATGGCTGCTTCTTTTGGAAATGCAGCATATGAGAGGCTGCCCATCGATGATGACGAGACTCCGGTGCCGGTTCCGGGAAGTGGACCAGTCGGATCGCCGGGAATTCTTGGACAGCAGCAACAACCACTCTTTCCAGATCCCACCTCGTCTATGTTTCATGGAATGCCTCCTAATCTCTTGAATTCATGTCAATTACCTTCTGAGGGCTATTGGAGCACTGGTCGTCCTCCTTTTAATTAA 897 50.61 MDQVSAQGRPILPPFLSRDLHLHPRHQFQYHQQQNSEDEQSGNGIINHGPKRERDENNTSSTTKAATPESKELSNNVGGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSLVMEITTGCDIMESISTFARRRQRGICILSGSGTVTNVTLKQPASPGAVVTLHGKFEILSLSGSFLPPPAPAAAFGLTIYLAGGQGQVVGGSVAGPLLASGPVVIMAASFGNAAYERLPIDDDETPVPVPGSGPVGSPGILGQQQQPLFPDPTSSMFHGMPPNLLNSCQLPSEGYWSTGRPPFN 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53432008 53432904 - Bma015983.1 Bma02g01149 78399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01149 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 225 IPR005175 -
Bma02g01149 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 109 244 - -
Bma02g01149 298 CDD DUF296 113 224 IPR005175 -
Bma02g01149 298 MobiDBLite consensus disorder prediction 1 102 - -
Bma02g01149 298 MobiDBLite consensus disorder prediction 27 43 - -
Bma02g01149 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 297 IPR014476 GO:0003680
Bma02g01149 298 PIRSF ESCAROLA 18 297 IPR014476 GO:0003680
Bma02g01149 298 ProSiteProfiles PPC domain profile profile. 109 247 IPR005175 -
Bma02g01149 298 MobiDBLite consensus disorder prediction 60 74 - -
Bma02g01149 298 MobiDBLite consensus disorder prediction 236 258 - -
Bma02g01149 298 Gene3D - 112 241 - -
Bma02g01149 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 5 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01149 Bma-Chr2:53432008 Bma04g00797 Bma-Chr4:9100592 1.28E-107 dispersed
Bma06g01590 Bma-Chr6:52144263 Bma02g01149 Bma-Chr2:53432008 1.68E-57 dispersed
Bma02g01149 Bma-Chr2:53432008 Bma05g00788 Bma-Chr5:44846922 1.59E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01149 - - jre:108980480 440.654