Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01157 ATGTCTAACAACGTTTCGAAATTGATCAGCAACACTTTGTCTCTAAACAAACCTCTTTACAACCCGAAACCCAAATACAAACACGGGTTTCCGACGTGGGTTAAGCCAGGTGACCGGAAACTGTTGCAGGCGCCTTCTCCGGCGGTATCTGCAAATATAGTGGTGGCTCAAGATGGGTCTGGAGATTATGACACGATTAGTGCCGCTGTTAAAGCTGCTTCTGACCGGTCGGGTACTGGGAGGTACGTGATTTACGTGAAAGCAGGAACTTATAAAGAGAACATCGAGATAAAAACGAAGAACATCATGTTGATCGGAGATGGAATTGGAAAAACCATCATTACCGGAAGTAAAAGCGTTGGTGGAGGTAGCACAACTTTCCGGTCAGCCACAGTTGCTGTGGTTGGAGATGGTTTTATTGGGCGTGACATCACAATTGAAAACACGGCCGGCCCGGAAAACCACCAAGCAGTGGCTCTCCGGTCAGGCTCAGACTTCTCGGTGTTCTACAAATGCAGTTTTGAAGGCTATCAAGACACCCTTTACGTCCACTCGGAACGACAATTCTATCGAGAATGTGACATTTACGGCACAGTTGATTTCATTTTCGGCAATGCTGCTGTTGTGCTCCAAAACTGTAATATTTTTCCACGCAAACCTCCAAACAAGACCAACACTCTCACTGCTCAAGGCCGAACCGATCAGAACCAAAACACAGGGATTTCGATTATCAATTGTCGAGTCACAGCCTCAGCGGAGTTAGAGCCCGTGGTTAGTACGGTCAAGACGTACTTAGGGCGGCCGTGGAAGGAGTATTCTAGAACCGTTTTCATGAAGACATACCTCGATAGCTTGATTAATCCTGCCGGATGGATGGAGTGGAGTGGCGATTTTGCCTTGAAGACGTTGTATTACGGTGAGTATATGAATAATGGTCCAGGATCATCAACTGCCGATCGAGTTAACTGGCCGGGATATCATGTCATCACAAGTGCTTCAGAAGCTTCGCAATTCACCGTTGAAAACTTTATCGACGGAAATACTTGGCTTCCAGCCACAGATGTTCCGTACACAACTGGCATTTAA 1086 46.59 MSNNVSKLISNTLSLNKPLYNPKPKYKHGFPTWVKPGDRKLLQAPSPAVSANIVVAQDGSGDYDTISAAVKAASDRSGTGRYVIYVKAGTYKENIEIKTKNIMLIGDGIGKTIITGSKSVGGGSTTFRSATVAVVGDGFIGRDITIENTAGPENHQAVALRSGSDFSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIFPRKPPNKTNTLTAQGRTDQNQNTGISIINCRVTASAELEPVVSTVKTYLGRPWKEYSRTVFMKTYLDSLINPAGWMEWSGDFALKTLYYGEYMNNGPGSSTADRVNWPGYHVITSASEASQFTVENFIDGNTWLPATDVPYTTGI 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53565311 53566883 + Bma015994.1 Bma02g01157 78407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01157 361 ProSitePatterns Pectinesterase signature 2. 195 204 IPR033131 -
Bma02g01157 361 PANTHER PECTINESTERASE 1 360 - -
Bma02g01157 361 SUPERFAMILY Pectin lyase-like 47 360 IPR011050 -
Bma02g01157 361 Pfam Pectinesterase 52 347 IPR000070 GO:0030599|GO:0042545
Bma02g01157 361 ProSitePatterns Pectinesterase signature 1. 78 97 IPR018040 -
Bma02g01157 361 PANTHER PECTINESTERASE 1 360 - -
Bma02g01157 361 Gene3D - 46 361 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01157 Bma-Chr2:53565311 Bma09g00750 Bma-Chr9:45969162 7.50E-139 dispersed
Bma05g00270 Bma-Chr5:7600164 Bma02g01157 Bma-Chr2:53565311 2.10E-87 dispersed
Bma02g01157 Bma-Chr2:53565311 Bma15g00533 Bma-Chr15:6156349 1.94E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01157 K01051 - vvi:100255703 596.66