Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01165 ATGGCCGGTTTGGACTTAAGCTCTGCTTCTCGTTTCGTTCATCAACTTCAACAGCGCCCGGACCTTCATCTTCAACGACCTCCCGCCGGCGATGATTCCTTCAACCGGAACCACTTTGCTGGAGCCGACGATGATGACGACGACAATACCCACCAAGGCCTCGACCTAATCACTTCAAACGCTGGACCCGGCGACATCGTTGCTCGCCGGCCCAGAGGTCGACCTCCAGGCTCCAAAAACAAGCCGAAACCGCCGGTGATCATTACAAGAGAGAGCGCAGATACTTTACGGGCTCATATACTAGAGGTCAGCTCCGGCTCCGATGTGTTTGAGTCTGTGGCGACGTATGCCCGGAAGCGTCAGCGAGGGATCTGTATATTAAGCGGAAGTGGAACTGTGACTAACGTCAGCTTACGTCAACCCTCTTCAGCCGGAGCTATCGTCACGCTTCACGGCCGGTTTGAGATACTATCTTTAACGGGCTCGTTTTTGCCCCCACCAGCGCCTCCGGGCGCTACCAGTTTGACGATATTCCTGGCCGGCGGACAAGGTCAAATTGTCGGAGGAAATGTGATCGGTGCTTTGATCGCCGCCGGTCCGGTCATCGTTATCGCATCTTCGTTCACAAACGTGGCTTACGAGAGATTACCGTTGGACGAAGAGGAGCCCATTCAGCAGCAGTCAGGGGAAGGATCAGGCCCCGGTTCCGGCGGAAATAACCCGTTTCCCGACCCTTCTTCTGGTTTGCAGTTCTTCAATCTGCCAAATCAAAGTCAGCTTCCGGTCGACGGGTGGGCCGGAAATTCCGCCGGAAGGTCTTCTTATTAA 828 54.95 MAGLDLSSASRFVHQLQQRPDLHLQRPPAGDDSFNRNHFAGADDDDDDNTHQGLDLITSNAGPGDIVARRPRGRPPGSKNKPKPPVIITRESADTLRAHILEVSSGSDVFESVATYARKRQRGICILSGSGTVTNVSLRQPSSAGAIVTLHGRFEILSLTGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVIGALIAAGPVIVIASSFTNVAYERLPLDEEEPIQQQSGEGSGPGSGGNNPFPDPSSGLQFFNLPNQSQLPVDGWAGNSAGRSSY 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53776721 53777548 - Bma016006.1 Bma02g01165 78415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01165 275 ProSiteProfiles PPC domain profile profile. 93 230 IPR005175 -
Bma02g01165 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 275 IPR014476 GO:0003680
Bma02g01165 275 MobiDBLite consensus disorder prediction 221 275 - -
Bma02g01165 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 97 210 IPR005175 -
Bma02g01165 275 MobiDBLite consensus disorder prediction 225 275 - -
Bma02g01165 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 275 - -
Bma02g01165 275 MobiDBLite consensus disorder prediction 17 86 - -
Bma02g01165 275 CDD DUF296 97 208 IPR005175 -
Bma02g01165 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 222 - -
Bma02g01165 275 Gene3D - 96 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02587 Bma-Chr1:83506095 Bma02g01165 Bma-Chr2:53776721 4.92E-48 dispersed
Bma02g00110 Bma-Chr2:1002028 Bma02g01165 Bma-Chr2:53776721 1.73E-51 dispersed
Bma02g00799 Bma-Chr2:42840999 Bma02g01165 Bma-Chr2:53776721 1.38E-65 dispersed
Bma02g01165 Bma-Chr2:53776721 Bma05g01075 Bma-Chr5:49485995 1.44E-71 dispersed
Bma03g00140 Bma-Chr3:1061309 Bma02g01165 Bma-Chr2:53776721 4.72E-76 dispersed
Bma04g00433 Bma-Chr4:3552874 Bma02g01165 Bma-Chr2:53776721 1.06E-18 dispersed
Bma04g00797 Bma-Chr4:9100592 Bma02g01165 Bma-Chr2:53776721 1.07E-69 dispersed
Bma07g01622 Bma-Chr7:51775117 Bma02g01165 Bma-Chr2:53776721 4.89E-78 dispersed
Bma08g01008 Bma-Chr8:49104811 Bma02g01165 Bma-Chr2:53776721 2.01E-72 dispersed
Bma08g01108 Bma-Chr8:50062189 Bma02g01165 Bma-Chr2:53776721 9.58E-61 dispersed
Bma07g00944 Bma-Chr7:35383210 Bma02g01165 Bma-Chr2:53776721 1.40E-118 transposed
Bma08g00707 Bma-Chr8:42781882 Bma02g01165 Bma-Chr2:53776721 2.05E-72 transposed
Bma11g00305 Bma-Chr11:2870731 Bma02g01165 Bma-Chr2:53776721 2.66E-45 transposed
Bma02g01165 Bma-Chr2:53776721 Bma06g01246 Bma-Chr6:49618595 3.72E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01165 - - nnu:104610369 393.66