Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g01189 | ATGGGTTCTGTAGGAAACTCAAATCCATGGTTTCAATACCAGTCATACAGAGACTGTTCTCAGGGATTCTGCTCCATATACTGTCCCCAATGGTGCTACATTATCTTCCCTCCTCCTCCACCTTTCGCCATTGAAGACAGCTCAAAAAACTCCTCCCCCTTTGATTTCTCTCCTCTCATAGTAGCAGTCATCGGAATCCTAGCCTCTGCTTTCATCATCATAGGTTACTTCACCTTCATCTCCAAATACTTCCGGCGAACCACCGGCAACAACAACGGGAACGGAGCTGCTGATTCAGATGACCAAATAAGCTCAGAATCATATCAGGCTTCTTCGTCATCGGGCCTGGACGAGGCTCTGATCAAGTCCATAACAGTTTGGAAGTACAAAAAAAATGATGGGTTTGTTGAAGAAACTGATCATTGCTCTGTTTGTCTCTCTGAGTTTCAAGAAAATGAAAGCCTGAGGATTTTGCCGAAATGCAGCCACCCTTTTCACCTACCATGCATAGACACCTGGCTCATGTCTAATTCTAGCTGTCCTCTGTGTCGTTCTACGATCTTACCTACTAATATTTTGCCTGTTTCTGCTCAACAAACTCAGCCATCCGGTTTGAATTTGTCTGCACCTGATTCCCAGTCCAGAATCAACGATCAGACTGTTTTAATGGTTCAGAATTTCCAGGAAGCCGTTGTTGTTGAAGATAGAAGTCATGGCTCTCCTAAGCATAACAGAGGGAGAGTTTCTGCAGAAAGACAGAGCTCAGAGCAAAGAGAGAGCATAATTGAAATTCGAGAAGATGGGTTCCAGTTCCAGCCATTTAGGAGGTCTGTTTCAATGACTTCTTGTTCATATCCAGCCCATGCTTCCGTTGATGACATTTTCAGAGCTACCTACAATGGCGAAAGAGTAGAAGAGGAAGAGGAAGAGCGAAGAAACTTACAAATGGGGATTGGATCCTCGAGGGGAATTGAAAAAGAAGATGGAAGATTTAATCACAGAAGGGGAGATCTAAATTTGGCAATGAAGAGATCTATCTCAGCTGGGAGAATATTGTTTACTAAGCAATAA | 1071 | 43.51 | MGSVGNSNPWFQYQSYRDCSQGFCSIYCPQWCYIIFPPPPPFAIEDSSKNSSPFDFSPLIVAVIGILASAFIIIGYFTFISKYFRRTTGNNNGNGAADSDDQISSESYQASSSSGLDEALIKSITVWKYKKNDGFVEETDHCSVCLSEFQENESLRILPKCSHPFHLPCIDTWLMSNSSCPLCRSTILPTNILPVSAQQTQPSGLNLSAPDSQSRINDQTVLMVQNFQEAVVVEDRSHGSPKHNRGRVSAERQSSEQRESIIEIREDGFQFQPFRRSVSMTSCSYPAHASVDDIFRATYNGERVEEEEEERRNLQMGIGSSRGIEKEDGRFNHRRGDLNLAMKRSISAGRILFTKQ | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 54008504 | 54009574 | + | Bma016030.2 | Bma02g01189 | 78439 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g01189 | 356 | MobiDBLite | consensus disorder prediction | 234 | 258 | - | - | |
Bma02g01189 | 356 | SMART | ring_2 | 142 | 183 | IPR001841 | - | |
Bma02g01189 | 356 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 189 | IPR013083 | - | |
Bma02g01189 | 356 | SUPERFAMILY | RING/U-box | 127 | 190 | - | - | |
Bma02g01189 | 356 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 184 | IPR001841 | - | |
Bma02g01189 | 356 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 3 | 354 | IPR044675 | - | |
Bma02g01189 | 356 | Pfam | Ring finger domain | 141 | 184 | IPR001841 | - | |
Bma02g01189 | 356 | MobiDBLite | consensus disorder prediction | 235 | 258 | - | - | |
Bma02g01189 | 356 | PANTHER | RING-H2 FINGER PROTEIN ATL53-RELATED | 3 | 354 | - | - | |
Bma02g01189 | 356 | CDD | RING-H2_PA-TM-RING | 141 | 184 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g01189 | Bma-Chr2:54008504 | Bma14g00158 | Bma-Chr14:2167625 | 2.63E-79 | dispersed | |
Bma14g01059 | Bma-Chr14:12803159 | Bma02g01189 | Bma-Chr2:54008504 | 1.30E-09 | dispersed | |
Bma02g01189 | Bma-Chr2:54008504 | Bma04g00744 | Bma-Chr4:7997018 | 8.76E-35 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g01189 | - | - | csv:101222852 | 309.301 |