Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01189 ATGGGTTCTGTAGGAAACTCAAATCCATGGTTTCAATACCAGTCATACAGAGACTGTTCTCAGGGATTCTGCTCCATATACTGTCCCCAATGGTGCTACATTATCTTCCCTCCTCCTCCACCTTTCGCCATTGAAGACAGCTCAAAAAACTCCTCCCCCTTTGATTTCTCTCCTCTCATAGTAGCAGTCATCGGAATCCTAGCCTCTGCTTTCATCATCATAGGTTACTTCACCTTCATCTCCAAATACTTCCGGCGAACCACCGGCAACAACAACGGGAACGGAGCTGCTGATTCAGATGACCAAATAAGCTCAGAATCATATCAGGCTTCTTCGTCATCGGGCCTGGACGAGGCTCTGATCAAGTCCATAACAGTTTGGAAGTACAAAAAAAATGATGGGTTTGTTGAAGAAACTGATCATTGCTCTGTTTGTCTCTCTGAGTTTCAAGAAAATGAAAGCCTGAGGATTTTGCCGAAATGCAGCCACCCTTTTCACCTACCATGCATAGACACCTGGCTCATGTCTAATTCTAGCTGTCCTCTGTGTCGTTCTACGATCTTACCTACTAATATTTTGCCTGTTTCTGCTCAACAAACTCAGCCATCCGGTTTGAATTTGTCTGCACCTGATTCCCAGTCCAGAATCAACGATCAGACTGTTTTAATGGTTCAGAATTTCCAGGAAGCCGTTGTTGTTGAAGATAGAAGTCATGGCTCTCCTAAGCATAACAGAGGGAGAGTTTCTGCAGAAAGACAGAGCTCAGAGCAAAGAGAGAGCATAATTGAAATTCGAGAAGATGGGTTCCAGTTCCAGCCATTTAGGAGGTCTGTTTCAATGACTTCTTGTTCATATCCAGCCCATGCTTCCGTTGATGACATTTTCAGAGCTACCTACAATGGCGAAAGAGTAGAAGAGGAAGAGGAAGAGCGAAGAAACTTACAAATGGGGATTGGATCCTCGAGGGGAATTGAAAAAGAAGATGGAAGATTTAATCACAGAAGGGGAGATCTAAATTTGGCAATGAAGAGATCTATCTCAGCTGGGAGAATATTGTTTACTAAGCAATAA 1071 43.51 MGSVGNSNPWFQYQSYRDCSQGFCSIYCPQWCYIIFPPPPPFAIEDSSKNSSPFDFSPLIVAVIGILASAFIIIGYFTFISKYFRRTTGNNNGNGAADSDDQISSESYQASSSSGLDEALIKSITVWKYKKNDGFVEETDHCSVCLSEFQENESLRILPKCSHPFHLPCIDTWLMSNSSCPLCRSTILPTNILPVSAQQTQPSGLNLSAPDSQSRINDQTVLMVQNFQEAVVVEDRSHGSPKHNRGRVSAERQSSEQRESIIEIREDGFQFQPFRRSVSMTSCSYPAHASVDDIFRATYNGERVEEEEEERRNLQMGIGSSRGIEKEDGRFNHRRGDLNLAMKRSISAGRILFTKQ 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54008504 54009574 + Bma016030.2 Bma02g01189 78439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01189 356 MobiDBLite consensus disorder prediction 234 258 - -
Bma02g01189 356 SMART ring_2 142 183 IPR001841 -
Bma02g01189 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 189 IPR013083 -
Bma02g01189 356 SUPERFAMILY RING/U-box 127 190 - -
Bma02g01189 356 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Bma02g01189 356 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 354 IPR044675 -
Bma02g01189 356 Pfam Ring finger domain 141 184 IPR001841 -
Bma02g01189 356 MobiDBLite consensus disorder prediction 235 258 - -
Bma02g01189 356 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 3 354 - -
Bma02g01189 356 CDD RING-H2_PA-TM-RING 141 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01189 Bma-Chr2:54008504 Bma14g00158 Bma-Chr14:2167625 2.63E-79 dispersed
Bma14g01059 Bma-Chr14:12803159 Bma02g01189 Bma-Chr2:54008504 1.30E-09 dispersed
Bma02g01189 Bma-Chr2:54008504 Bma04g00744 Bma-Chr4:7997018 8.76E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01189 - - csv:101222852 309.301